Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq683 116 3e-21 seq188 107 2e-18 seq51 93.3 4e-14 seq475 91.5 1e-13 seq10281 86.0 5e-12 >seq683 Length=758919 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || || ||||| || | || || || | || || Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||||||||| || ||| |||||||||| |||||| | || ||| ||||| Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 117260 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| ||||| | | | || || || | || || || | ||||| | | Sbjct 117261 GGATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCT 117320 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 | |||||||| ||||| |||||||| ||||||| || Sbjct 117321 TGCCCGTCAGGGTTTTCACAAAGATCTGCATCTCTA 117356 >seq188 Length=3215107 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||| | || || ||| |||||| || |||||||| || | || || || | || || Sbjct 2830953 CACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 2830894 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||||||||| || |||||||||||||| |||||| | || ||| |||| Sbjct 2830893 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTTTT 2830835 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| ||||| || | | || || | | || || || | ||||| | | Sbjct 2830834 GGATTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCT 2830775 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 | || || || || || |||||||| ||||||| |||| Sbjct 2830774 TGCCTGTTAGGGTCTTCACAAAGATCTGCATCTCTACG 2830737 >seq51 Length=16196278 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||| | || |||| ||| || | || || | | || || Sbjct 11819248 CACCAAGTGCAGAGTGGACTCTCTCTGGATATCATAGTCTGAGAGAGTGCAGCCATCCTC 11819307 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| ||||| || |||| ||||||||| |||||| | || | | ||||| Sbjct 11819308 CAGCTGTTTGCCTGCAAAAATCAGACACTGCTGGTCAGGTGGG-ATGCCCGCCTTGTCTT 11819366 Query 39194 TGATTTTCTGTTTGAGCGTCGCCA-CCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 |||||| ||||| | || || || || || | ||| || || | ||||| | Sbjct 11819367 GGATTTTAGCTTTGA-CATCCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTC 11819425 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || ||||||| || || |||||||| ||||||| Sbjct 11819426 TTCACCGTCAGGGTCTTCACAAAGATCTGCATCT 11819459 >seq475 Length=1570329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || || | ||| || || | || || ||||| ||||||||||| Sbjct 1256071 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 1256012 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | || ||| || ||| ||| || || | | Sbjct 1256011 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 1255952 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||||| | |||||| |||| ||||| | || || ||||| || || || Sbjct 1255951 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1255892 Query 39273 AAAGATTTGCATCTTTAC 39290 || |||||||| || || Sbjct 1255891 GAAAATTTGCATTTTGAC 1255874 >seq10281 Length=966 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || ||||| ||| || || || || || || || | || || || Sbjct 705 CGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCCG 646 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| || | | |||||| || |||||| | || ||||| Sbjct 645 TCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGG-ATGCCTTCTTT 587 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATC---GCTCGACTCCACGTCCACCG 39244 ||| |||||| ||| | ||| | | | ||||| |||| ||||| |||| | Sbjct 586 GTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTC---TCCACCTCCAAAG 531 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | || ||||||| |||||||||||||||||||| Sbjct 530 TAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || |||||| |||||| || || || || ||||| | ||||| |||| || Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCG 184 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| || || ||||| | ||||||||| | || | || || || ||| | Sbjct 183 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGG 124 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 || || ||| | ||| | | | || || ||| ||||| || | ||||| | Sbjct 123 ATCTTGACTTT-AACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGT 68 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||||| || || || |||| ||| | |||||||| || Sbjct 67 CTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTGAC 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429213491315807