Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq683 116 3e-21
seq188 107 2e-18
seq51 93.3 4e-14
seq475 91.5 1e-13
seq10281 86.0 5e-12
>seq683
Length=758919
Score = 116 bits (128), Expect = 3e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||||| || || ||||| || | || || || | || ||
Sbjct 117142 CACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 117201
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||||||||||||||| || ||| |||||||||| |||||| | || ||| |||||
Sbjct 117202 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTT 117260
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|||||| ||||| | | | || || || | || || || | ||||| | |
Sbjct 117261 GGATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGGTCT 117320
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289
| |||||||| ||||| |||||||| ||||||| ||
Sbjct 117321 TGCCCGTCAGGGTTTTCACAAAGATCTGCATCTCTA 117356
>seq188
Length=3215107
Score = 107 bits (118), Expect = 2e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||| | || || ||| |||||| || |||||||| || | || || || | || ||
Sbjct 2830953 CACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 2830894
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||||||||||||||| || |||||||||||||| |||||| | || ||| ||||
Sbjct 2830893 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTTTT 2830835
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|||||| ||||| || | | || || | | || || || | ||||| | |
Sbjct 2830834 GGATTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCT 2830775
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291
| || || || || || |||||||| ||||||| ||||
Sbjct 2830774 TGCCTGTTAGGGTCTTCACAAAGATCTGCATCTCTACG 2830737
>seq51
Length=16196278
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||| | || |||| ||| || | || || | | || ||
Sbjct 11819248 CACCAAGTGCAGAGTGGACTCTCTCTGGATATCATAGTCTGAGAGAGTGCAGCCATCCTC 11819307
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||||||||| ||||| || |||| ||||||||| |||||| | || | | |||||
Sbjct 11819308 CAGCTGTTTGCCTGCAAAAATCAGACACTGCTGGTCAGGTGGG-ATGCCCGCCTTGTCTT 11819366
Query 39194 TGATTTTCTGTTTGAGCGTCGCCA-CCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
|||||| ||||| | || || || || || | ||| || || | ||||| |
Sbjct 11819367 GGATTTTAGCTTTGA-CATCCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGTGATGGTC 11819425
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| ||||||| || || |||||||| |||||||
Sbjct 11819426 TTCACCGTCAGGGTCTTCACAAAGATCTGCATCT 11819459
>seq475
Length=1570329
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
|||||| || || || || || | ||| || || | || || ||||| |||||||||||
Sbjct 1256071 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 1256012
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| || | ||||||||| | ||| | || ||| || ||| ||| || || | |
Sbjct 1256011 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 1255952
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | | || ||||| | |||||| |||| ||||| | || || ||||| || || ||
Sbjct 1255951 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1255892
Query 39273 AAAGATTTGCATCTTTAC 39290
|| |||||||| || ||
Sbjct 1255891 GAAAATTTGCATTTTGAC 1255874
>seq10281
Length=966
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/220 (70%), Gaps = 10/220 (5%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || ||||| || ||||| ||| || || || || || || || | || || ||
Sbjct 705 CGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCCG 646
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188
|| || ||||| || || ||||| || | | |||||| || |||||| | || |||||
Sbjct 645 TCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGG-ATGCCTTCTTT 587
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATC---GCTCGACTCCACGTCCACCG 39244
||| |||||| ||| | ||| | | | ||||| |||| ||||| |||| |
Sbjct 586 GTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTC---TCCACCTCCAAAG 531
Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || | || ||||||| ||||||||||||||||||||
Sbjct 530 TAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
Score = 82.4 bits (90), Expect = 7e-11
Identities = 152/219 (69%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || |||||| |||||| || || || || ||||| | ||||| |||| ||
Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCG 184
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||||||||| || || ||||| | ||||||||| | || | || || || ||| |
Sbjct 183 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGG 124
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251
|| || ||| | ||| | | | || || ||| ||||| || | ||||| |
Sbjct 123 ATCTTGACTTT-AACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGT 68
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290
||||| || || || |||| ||| | |||||||| ||
Sbjct 67 CTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTGAC 29
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429213491315807
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |