Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq29432 127 1e-24
seq19201 109 4e-19
seq683 107 1e-18
seq10281 105 5e-18
seq17446 104 2e-17
seq273 100 2e-16
seq58 91.5 1e-13
seq188 89.7 3e-13
seq19370 86.0 4e-12
seq73 86.0 4e-12
seq142 82.4 5e-11
>seq29432
Length=351
Score = 127 bits (140), Expect = 1e-24
Identities = 172/236 (73%), Gaps = 3/236 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| |||||||| || || || || ||||| ||||| || || |||
Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || | | ||||||||||| | || || ||
Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGA-TCCAAGACAAAGAAGGAATCCCTCCGGA 223
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| ||||| || || || || || ||||| || ||||||| || ||||| | || ||
Sbjct 222 TCAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTA 163
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841
|||||| || ||||| ||||| | ||| | || || ||| | ||||||| ||||
Sbjct 162 CAACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGGTATCA 107
>seq19201
Length=536
Score = 109 bits (120), Expect = 4e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || |||||||| ||||| || ||||| || || || ||||| ||
Sbjct 508 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCG 449
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || | | ||||| ||||| | || || ||
Sbjct 448 TCCGACACGATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAAGGAATCCCACCGGA 390
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| ||||| | ||||| || || || || |||||||||| | | || | | |||||
Sbjct 389 TCAGCAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGATTA 330
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|||||| || || ||||| || | || || ||| | | || ||||||||
Sbjct 329 CAACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 278
>seq683
Length=758919
Score = 107 bits (118), Expect = 1e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| ||||| || || ||||| ||||| || | |||
Sbjct 117351 ATGCAGATCTTTGTGAAAACCCTGACGGGCAAGACCATCACACTCGAGGTCAAGCCCAGT 117292
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||||| | ||| ||||| ||||| || || | || || || ||
Sbjct 117291 GACACTATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 117232
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||| | | || ||||| |||||||| ||||| || | |||||| | || || |||
Sbjct 117231 CAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAC 117172
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 117171 ATCCAGAAAGAGTCCAC 117155
>seq10281
Length=966
Score = 105 bits (116), Expect = 5e-18
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23600 AATTAC--TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGA 23657
|||||| | || ||||||| ||| |||| || ||||| ||||| || ||||| |||||
Sbjct 22 AATTACAGTCAAGATGCAGACCTTCATTAAGACTCTCACCGGAAAGACAATCACCCTCGA 81
Query 23658 AGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717
|| || | | ||||| | || | | ||| || || || || ||||| |
Sbjct 82 GGTGGAAAGCTCTGACACCATCGACAACGTTAAAGTCAAGATCCAGGATAAGGAAGGCAT 141
Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777
||||| || || ||| | | || || ||||||||||| || ||||||| || |||||
Sbjct 142 CCCGCCGGACCAGCAGAGGCTTATCTTCGCCGGCAAACAGCTCGAAGACGGCCGAACTTT 201
Query 23778 AGGCGATTACAACATACAAAAAGAGTCCAC 23807
| ||| |||||||| || |||||||||||
Sbjct 202 GGCCGACTACAACATCCAGAAAGAGTCCAC 231
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| ||||| || || |||||||| || || || |
Sbjct 719 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTGGAGGTCGAGAGTTCT 778
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| | || | | || ||||| |||||||||||| | || || || ||
Sbjct 779 GATACTATCGACAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCGGACCAG 838
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || || || || | ||||| || | || ||||||
Sbjct 839 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAAC 898
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || |||||||| || | || || |||
Sbjct 899 ATCCAGAAAGAGTCGACCCTCCACTTGGTT 928
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || ||||||||| | ||||| || ||||| ||| | || || || | |
Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | || | | ||| ||||| ||||||||||| | || || |||||
Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||| || || || || ||||||| || ||||| | || ||||||
Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAAC 670
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 671 ATCCAGAAGGAGTCTAC 687
>seq17446
Length=585
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
|||||||||||| |||| |||||||||||| | | ||||||||||| || |||||||||
Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
|| | || || ||| ||||||||||| || |||||||| || | || | || ||
Sbjct 75 GATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTTG 134
Query 23824 AGGTTGCGAGGAGGA 23838
||| | |||| |||
Sbjct 135 AGGCTCAGAGGTGGA 149
>seq273
Length=4066651
Score = 100 bits (110), Expect = 2e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || || ||| | || || || || ||||| || || || || |||
Sbjct 887416 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 887357
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| | || ||| | || | || | | |||||||| || | || || || |
Sbjct 887356 TGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACC 887298
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | || || |||||||||||||| ||||||||| |||||| | ||| ||||
Sbjct 887297 AGCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACA 887238
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || |||||||||||
Sbjct 887237 ACATCCAGAAAGAGTCCAC 887219
>seq58
Length=4472761
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || |||||||| || || ||||| ||||| ||||| ||||| || |
Sbjct 4394723 ATGCAGATTTTTGTGAAAACCCTTACTGGGAAAACTATCACCCTCGAGGTTGAACCCTTG 4394664
Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | | |||||| || || ||| || || || ||||| | | || | |||
Sbjct 4394663 GATACAATAGAAAATATAAAGAC-AAAGATCCAGGATAAGGAAGGAATTGCTCCTGCTCA 4394605
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | | ||||| ||||| ||| |||||| | ||||||| | || |||||
Sbjct 4394604 GCAAAGACTGAGCTTTGCTGGCAAGCAAGTGGAAGCTGGACGCACTGT--CTGACTACAA 4394547
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||| | ||| |||||||| | ||| | || || ||
Sbjct 4394546 CATTCCAAAGGAGTCCACTCTTCATCTTGTGTTGAG 4394511
>seq188
Length=3215107
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || ||||| || || || | |||
Sbjct 2830744 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACACTTGAGGTCAAGCCCAAT 2830803
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | ||| | |||| | |||| || || | || || || ||
Sbjct 2830804 GACACTATTGAGAATGTCAAAGCTAAAA-TCCAAAACAAGGAGGGCATCCCACCTGACCA 2830862
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||| |||||||| ||||| || | |||||| | || || ||
Sbjct 2830863 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 2830922
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 2830923 TATCCAGAAAGAGTCCAC 2830940
>seq19370
Length=533
Score = 86.0 bits (94), Expect = 4e-12
Identities = 131/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AAT 23684
|||||||| || || || || ||||||||||| || || || ||||| | || |||
Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60
Query 23685 ATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATT 23744
| || | |||||| ||||| ||||| | || || ||||| ||| | || || ||
Sbjct 61 GTCAAGGC-CAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTT 119
Query 23745 TGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTC 23804
||||| ||||| || || || | || || || | ||| ||||| || |||||||| ||
Sbjct 120 CGCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATC 179
Query 23805 CACA 23808
|||
Sbjct 180 TACA 183
>seq73
Length=6645612
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||| | | ||| || || || ||||| || |||||||| ||||| ||
Sbjct 5748258 AAGATGCAGATTTTCATGAGAACTCTTACTGGGAAAACTATTACTCTCGAGGTTGAACCC 5748317
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
||| || || || | |||| || || || |||||||| | || || | |
Sbjct 5748318 TTGGATACAGTGGACAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGTT 5748377
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | ||| ||| | ||||| |||||||||| | ||||||||| | | |
Sbjct 5748378 CAGCAAAGACTAAGCTTTTCTGGCAAGCAACTGGAAGCTGGACGCACTTTGTCTAACTGC 5748437
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| | ||| ||||||||
Sbjct 5748438 AACATTCCAAAGGAGTCCAC 5748457
>seq142
Length=3748655
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/219 (68%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666
||| || ||||||||||| |||||||| || | ||| | |||||||| || ||||| |
Sbjct 2342957 TAAGATACAGATTTTCGTGAAAACCCTTACTTGGAAATCCATCACTCTTGAGGTTGAACC 2343016
Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||| || | |||| |||| || | || |||||||| | || || ||
Sbjct 2343017 CTTGGATACAATAGAAAATGTAAAGACCAAGACCCAGGATAAAGAAGGAATTCCTCCTGA 2343076
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
| |||| | | | ||||| ||||| ||| ||||| ||| ||||| || ||
Sbjct 2343077 TTAACAAAGACTGAGCTTTGCTGGCAAGAAAC--GAAGATAGACGTACTTTGTCTGACTA 2343134
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|||||| ||||| |||||||| | ||| | || || ||
Sbjct 2343135 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 2343173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337748263547012
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