Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq29432 127 1e-24 seq19201 109 4e-19 seq683 107 1e-18 seq10281 105 5e-18 seq17446 104 2e-17 seq273 100 2e-16 seq58 91.5 1e-13 seq188 89.7 3e-13 seq19370 86.0 4e-12 seq73 86.0 4e-12 seq142 82.4 5e-11 >seq29432 Length=351 Score = 127 bits (140), Expect = 1e-24 Identities = 172/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || ||||| ||||| || || ||| Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||||||||| | || || || Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGA-TCCAAGACAAAGAAGGAATCCCTCCGGA 223 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| || || || || || ||||| || ||||||| || ||||| | || || Sbjct 222 TCAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTA 163 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 |||||| || ||||| ||||| | ||| | || || ||| | ||||||| |||| Sbjct 162 CAACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGGTATCA 107 >seq19201 Length=536 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||||| ||||| || ||||| || || || ||||| || Sbjct 508 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAATCG 449 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 448 TCCGACACGATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAAGGAATCCCACCGGA 390 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| | ||||| || || || || |||||||||| | | || | | ||||| Sbjct 389 TCAGCAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGATTA 330 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || || ||||| || | || || ||| | | || |||||||| Sbjct 329 CAACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 278 >seq683 Length=758919 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| ||||| || || ||||| ||||| || | ||| Sbjct 117351 ATGCAGATCTTTGTGAAAACCCTGACGGGCAAGACCATCACACTCGAGGTCAAGCCCAGT 117292 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | ||| ||||| ||||| || || | || || || || Sbjct 117291 GACACTATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 117232 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||| | | || ||||| |||||||| ||||| || | |||||| | || || ||| Sbjct 117231 CAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAC 117172 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 117171 ATCCAGAAAGAGTCCAC 117155 >seq10281 Length=966 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23600 AATTAC--TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGA 23657 |||||| | || ||||||| ||| |||| || ||||| ||||| || ||||| ||||| Sbjct 22 AATTACAGTCAAGATGCAGACCTTCATTAAGACTCTCACCGGAAAGACAATCACCCTCGA 81 Query 23658 AGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || | | ||||| | || | | ||| || || || || ||||| | Sbjct 82 GGTGGAAAGCTCTGACACCATCGACAACGTTAAAGTCAAGATCCAGGATAAGGAAGGCAT 141 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 ||||| || || ||| | | || || ||||||||||| || ||||||| || ||||| Sbjct 142 CCCGCCGGACCAGCAGAGGCTTATCTTCGCCGGCAAACAGCTCGAAGACGGCCGAACTTT 201 Query 23778 AGGCGATTACAACATACAAAAAGAGTCCAC 23807 | ||| |||||||| || ||||||||||| Sbjct 202 GGCCGACTACAACATCCAGAAAGAGTCCAC 231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || |||||||| || || || | Sbjct 719 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTGGAGGTCGAGAGTTCT 778 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || ||||| |||||||||||| | || || || || Sbjct 779 GATACTATCGACAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCGGACCAG 838 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| || | || |||||| Sbjct 839 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAAC 898 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || |||||||| || | || || ||| Sbjct 899 ATCCAGAAAGAGTCGACCCTCCACTTGGTT 928 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||||||| | ||||| || ||||| ||| | || || || | | Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| ||||| ||||||||||| | || || ||||| Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || || ||||||| || ||||| | || |||||| Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAAC 670 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 671 ATCCAGAAGGAGTCTAC 687 >seq17446 Length=585 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| |||||||||||| | | ||||||||||| || ||||||||| Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || ||| ||||||||||| || |||||||| || | || | || || Sbjct 75 GATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTTG 134 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||| ||| Sbjct 135 AGGCTCAGAGGTGGA 149 >seq273 Length=4066651 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || || || || ||||| || || || || ||| Sbjct 887416 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 887357 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | |||||||| || | || || || | Sbjct 887356 TGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCCCCTGACC 887298 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||||||||| ||||||||| |||||| | ||| |||| Sbjct 887297 AGCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACA 887238 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 887237 ACATCCAGAAAGAGTCCAC 887219 >seq58 Length=4472761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| || || ||||| ||||| ||||| ||||| || | Sbjct 4394723 ATGCAGATTTTTGTGAAAACCCTTACTGGGAAAACTATCACCCTCGAGGTTGAACCCTTG 4394664 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | | |||||| || || ||| || || || ||||| | | || | ||| Sbjct 4394663 GATACAATAGAAAATATAAAGAC-AAAGATCCAGGATAAGGAAGGAATTGCTCCTGCTCA 4394605 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | | ||||| ||||| ||| |||||| | ||||||| | || ||||| Sbjct 4394604 GCAAAGACTGAGCTTTGCTGGCAAGCAAGTGGAAGCTGGACGCACTGT--CTGACTACAA 4394547 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| | ||| |||||||| | ||| | || || || Sbjct 4394546 CATTCCAAAGGAGTCCACTCTTCATCTTGTGTTGAG 4394511 >seq188 Length=3215107 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || || | ||| Sbjct 2830744 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACACTTGAGGTCAAGCCCAAT 2830803 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | |||| | |||| || || | || || || || Sbjct 2830804 GACACTATTGAGAATGTCAAAGCTAAAA-TCCAAAACAAGGAGGGCATCCCACCTGACCA 2830862 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| |||||||| ||||| || | |||||| | || || || Sbjct 2830863 GCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 2830922 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 2830923 TATCCAGAAAGAGTCCAC 2830940 >seq19370 Length=533 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AAT 23684 |||||||| || || || || ||||||||||| || || || ||||| | || ||| Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60 Query 23685 ATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATT 23744 | || | |||||| ||||| ||||| | || || ||||| ||| | || || || Sbjct 61 GTCAAGGC-CAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTT 119 Query 23745 TGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTC 23804 ||||| ||||| || || || | || || || | ||| ||||| || |||||||| || Sbjct 120 CGCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATC 179 Query 23805 CACA 23808 ||| Sbjct 180 TACA 183 >seq73 Length=6645612 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | | ||| || || || ||||| || |||||||| ||||| || Sbjct 5748258 AAGATGCAGATTTTCATGAGAACTCTTACTGGGAAAACTATTACTCTCGAGGTTGAACCC 5748317 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || || || | |||| || || || |||||||| | || || | | Sbjct 5748318 TTGGATACAGTGGACAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGTT 5748377 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | ||| ||| | ||||| |||||||||| | ||||||||| | | | Sbjct 5748378 CAGCAAAGACTAAGCTTTTCTGGCAAGCAACTGGAAGCTGGACGCACTTTGTCTAACTGC 5748437 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| | ||| |||||||| Sbjct 5748438 AACATTCCAAAGGAGTCCAC 5748457 >seq142 Length=3748655 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||| || ||||||||||| |||||||| || | ||| | |||||||| || ||||| | Sbjct 2342957 TAAGATACAGATTTTCGTGAAAACCCTTACTTGGAAATCCATCACTCTTGAGGTTGAACC 2343016 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||| || | |||| |||| || | || |||||||| | || || || Sbjct 2343017 CTTGGATACAATAGAAAATGTAAAGACCAAGACCCAGGATAAAGAAGGAATTCCTCCTGA 2343076 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 | |||| | | | ||||| ||||| ||| ||||| ||| ||||| || || Sbjct 2343077 TTAACAAAGACTGAGCTTTGCTGGCAAGAAAC--GAAGATAGACGTACTTTGTCTGACTA 2343134 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||| ||||| |||||||| | ||| | || || || Sbjct 2343135 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 2343173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337748263547012