Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq170 172 4e-38 seq56 96.9 3e-15 >seq170 Length=9568404 Score = 172 bits (190), Expect = 4e-38 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| |||||| Sbjct 9399134 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 9399075 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||||||| |||||||||| || |||||||| || ||||| |||| | Sbjct 9399074 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 9399015 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||||||||| || ||||||||| Sbjct 9399014 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGAGCCATGAGA 9398970 >seq56 Length=7808877 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | |||||| | | ||||| ||| || || || Sbjct 7423794 TTGAGTTCTCTGCTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTTTTCTCAGGA 7423853 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| |||||||||||| Sbjct 7423854 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 7423901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405849169717954