Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq794 125 6e-24 seq3 104 2e-17 seq514 87.8 2e-12 seq234 82.4 7e-11 >seq794 Length=452738 Score = 125 bits (138), Expect = 6e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || |||||||| |||||||| || | ||||| |||||||| ||| || ||||||| Sbjct 433460 CTTGTGAAAACCGACATTCAAATAGCTCTTCCTTCTGGGTGCTATGGAAGAGTAGCTCCA 433519 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 | ||||||||||| |||||||| || |||| || || ||||| |||||| ||| Sbjct 433520 CGTTCTGGATTGGCTACAAAACACTTCATATACGTAGGAGCTGGTGTCATAGATGAAGAT 433579 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG--AGAAAAATCATACAGTATAA 31946 || |||||||| |||| |||| ||||| ||||||| || |||| | || | | Sbjct 433580 TACAGAGGAAATATTGGTGTTGTACTGTTTGATTTTGGCAAGGAAAAGTTTGAAG--TCA 433637 Query 31947 AAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||| || | | || || || ||||| ||| Sbjct 433638 AAAAGGGTGACCGAATTGCACAGCTCATTTGTGAA 433672 >seq3 Length=9954913 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || |||||||| |||||||| ||| Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 27109 Query 4692 AC 4693 || Sbjct 27108 AC 27107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| ||||| || || || || |||||||| ||||||||||| ||||| || ||| Sbjct 25328 TCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGCA 25269 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 25268 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 25225 >seq514 Length=1022489 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||||| | || || || ||||| || || || || ||||||||||||||||| || || Sbjct 290237 ACAAAAACCTT--ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAA 290294 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 | ||||| ||||| |||| || || || ||||| || |||||||| || | ||| || Sbjct 290295 GATGTGAGAGATAAAATACTTCTCCTCTGGTTTAAGCTTGTTCCAGTGAGGGAGATCCTT 290354 Query 5039 AGTTAAATCAAC 5050 | || ||||| Sbjct 290355 TGACAAGTCAAC 290366 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 275124 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 275183 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 275184 ATAAAATCAAAGGGATT 275200 >seq234 Length=5675871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/170 (72%), Gaps = 10/170 (6%) Strand=Plus/Plus Query 31769 CTAGTTAAAACCGA---TATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || ||||| || |||||| || | | ||||| ||||| | ||| || ||||| Sbjct 2692267 CTTGTGAAAACTGACATTATTCAGATAGCCCTTCCTTCTGGGTGTCAGGGAAGAGTAGCT 2692326 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | |||||| | || | |||||||| || || || || || ||||| |||||| | Sbjct 2692327 CC-ACATCTGGCTAAGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAA 2692385 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 | || |||||||| ||| |||| ||||||||||||| |||||| Sbjct 2692386 AATTACAGAGGAAATATTG---TTGTACTGTTTAATTTTGGCAAAGAAAA 2692432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426719421130187