Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq794 125 6e-24
seq3 104 2e-17
seq514 87.8 2e-12
seq234 82.4 7e-11
>seq794
Length=452738
Score = 125 bits (138), Expect = 6e-24
Identities = 158/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828
|| || |||||||| |||||||| || | ||||| |||||||| ||| || |||||||
Sbjct 433460 CTTGTGAAAACCGACATTCAAATAGCTCTTCCTTCTGGGTGCTATGGAAGAGTAGCTCCA 433519
Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888
| ||||||||||| |||||||| || |||| || || ||||| |||||| |||
Sbjct 433520 CGTTCTGGATTGGCTACAAAACACTTCATATACGTAGGAGCTGGTGTCATAGATGAAGAT 433579
Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG--AGAAAAATCATACAGTATAA 31946
|| |||||||| |||| |||| ||||| ||||||| || |||| | || | |
Sbjct 433580 TACAGAGGAAATATTGGTGTTGTACTGTTTGATTTTGGCAAGGAAAAGTTTGAAG--TCA 433637
Query 31947 AAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
||||||| || | | || || || ||||| |||
Sbjct 433638 AAAAGGGTGACCGAATTGCACAGCTCATTTGTGAA 433672
>seq3
Length=9954913
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| || | || ||||| | |||| || ||
Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || |||||||| |||||||| |||
Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 27109
Query 4692 AC 4693
||
Sbjct 27108 AC 27107
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| ||||| || || || || |||||||| ||||||||||| ||||| || |||
Sbjct 25328 TCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGCA 25269
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | |||||||| | ||||||||
Sbjct 25268 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 25225
>seq514
Length=1022489
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/132 (75%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978
|||||| | || || || ||||| || || || || ||||||||||||||||| || ||
Sbjct 290237 ACAAAAACCTT--ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAA 290294
Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038
| ||||| ||||| |||| || || || ||||| || |||||||| || | ||| ||
Sbjct 290295 GATGTGAGAGATAAAATACTTCTCCTCTGGTTTAAGCTTGTTCCAGTGAGGGAGATCCTT 290354
Query 5039 AGTTAAATCAAC 5050
| || |||||
Sbjct 290355 TGACAAGTCAAC 290366
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 275124 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 275183
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 275184 ATAAAATCAAAGGGATT 275200
>seq234
Length=5675871
Score = 82.4 bits (90), Expect = 7e-11
Identities = 122/170 (72%), Gaps = 10/170 (6%)
Strand=Plus/Plus
Query 31769 CTAGTTAAAACCGA---TATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825
|| || ||||| || |||||| || | | ||||| ||||| | ||| || |||||
Sbjct 2692267 CTTGTGAAAACTGACATTATTCAGATAGCCCTTCCTTCTGGGTGTCAGGGAAGAGTAGCT 2692326
Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885
|| | |||||| | || | |||||||| || || || || || ||||| |||||| |
Sbjct 2692327 CC-ACATCTGGCTAAGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAA 2692385
Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
| || |||||||| ||| |||| ||||||||||||| ||||||
Sbjct 2692386 AATTACAGAGGAAATATTG---TTGTACTGTTTAATTTTGGCAAAGAAAA 2692432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426719421130187
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |