Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq170 147 2e-30
>seq170
Length=9568404
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || ||||||||||||||||| |||||
Sbjct 9399134 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 9399075
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
||||| || |||||||| | |||||||| || ||||| || || ||||| || |
Sbjct 9399074 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 9399015
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
||||| ||||| || | ||| ||||||||||| |||||||||||
Sbjct 9399014 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGAGCCATGAG 9398971
Score = 87.8 bits (96), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| ||||| || ||||||||||| || || || || || || || | ||
Sbjct 9395629 CATATCTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 9395570
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| ||||| |||| ||| ||| |||||| ||||| | ||| |||||||| ||
Sbjct 9395569 CCCTTCTTCTCTGTTGGAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCATC 9395510
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||||| | || ||||| || || ||||| | |||||||| ||
Sbjct 9395509 CCAGATTCTCACTCCCTTGGATGACAGTTCTTTAGCATTTGTGGATCC 9395462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369221510774009
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |