Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq782 275 9e-69 seq93 132 7e-26 seq3 125 1e-23 seq794 111 2e-19 >seq782 Length=486663 Score = 275 bits (304), Expect = 9e-69 Identities = 350/480 (73%), Gaps = 9/480 (2%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| |||||| || || ||| ||| | || || ||||||||||| |||| | Sbjct 446760 GTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATACATACCAGTCTTTAAA 446701 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 ||| | |||| |||||||| ||||| || || |||||| ||| ||| | || Sbjct 446700 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGCA------ATG 446647 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || |||| ||||| |||||||| |||||||| ||||| ||||| ||||| || | | Sbjct 446646 TGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGA 446587 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 ||||| || |||| |||||||| | ||| || ||| ||| || | ||||| |||| Sbjct 446586 ATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGGAATT 446527 Query 77022 TTTG-TAT--TTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 | || ||| | || || || ||| || ||||| ||| || || || |||||| Sbjct 446526 TCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATCTGATTTTTCATCTCTTCATTC 446467 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 ||||| | ||| | | | || | || | |||||||| || || ||||||||||| Sbjct 446466 CACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCTCCT 446407 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 ||||| ||||| |||||||| || || |||||| ||||||| | || ||||| |||||| Sbjct 446406 GACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTCAATGGACTCATTATTTCCC 446347 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 | || |||||||| |||||||| ||||| || || | | |||||||||||| | |||| Sbjct 446346 AGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTATTTCTTATACCA 446287 >seq93 Length=2374459 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | || Sbjct 38943 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 39002 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| || |||||||| |||||||| ||||| || || | | ||||||| Sbjct 39003 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 39062 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 39063 TTTCTTATACCAT 39075 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || ||| Sbjct 59619 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 59678 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 59679 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 59738 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 59739 ATATGTTGTGGTCTTTCAGCC 59759 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 52515 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 52574 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | || || ||||||| || Sbjct 52575 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 52634 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || | || || || | | |||||||| Sbjct 52635 TCCAAGTAAATAGCAAATGCCCCAGGTCG 52663 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| || |||||||| || Sbjct 52055 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 52114 Query 77975 CATCAATGACCAGT 77988 |||||| ||||||| Sbjct 52115 CATCAAAGACCAGT 52128 >seq3 Length=9954913 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || |||||||| || ||||| || Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGC 27110 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||||| ||||||||| || | ||||||||||| || || || || | Sbjct 25339 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGT 25280 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 25279 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 25225 >seq794 Length=452738 Score = 111 bits (122), Expect = 2e-19 Identities = 246/362 (68%), Gaps = 18/362 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | || ||| ||| |||||| | ||| |||||| Sbjct 433754 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTT-AGTGTCATCTAAAACTTGAACTTCC 433696 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | ||||||||| | || | || | | || || || || |||| |||||| | || Sbjct 433695 TCTATTTCAGGATAAAAAATCCATTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 433636 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | || || ||| || | ||| | || ||||| | ||||| |||||| Sbjct 433635 ACTTCAAACTTTTCCTTGCCAAAATCAAACAGTACAACACCAATATTTCCTCTGTAATCT 433576 Query 46054 TCATCTATTACTCCCCCTCCCACAT---CGATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| || | || |||| || || |||||| | ||| Sbjct 433575 TCATCTATGACACCAGCTCCTACGTATATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 433516 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| ||||||||| ||||| || | || || |||| || ||||| | ||| Sbjct 433515 GCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATTTGAATGTCGGTTTTCA-CAA 433461 Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 ||||||| ||| || | || || || || |||| ||| | ||||| ||||| Sbjct 433460 -GGATTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACAGTACAGGTCATAGCCTGCG 433402 Query 46225 GC 46226 || Sbjct 433401 GC 433400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694117936324960