Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq782 275 9e-69
seq93 132 7e-26
seq3 125 1e-23
seq794 111 2e-19
>seq782
Length=486663
Score = 275 bits (304), Expect = 9e-69
Identities = 350/480 (73%), Gaps = 9/480 (2%)
Strand=Plus/Minus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| ||||| |||||| || || ||| ||| | || || ||||||||||| |||| |
Sbjct 446760 GTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATACATACCAGTCTTTAAA 446701
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
||| | |||| |||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 446700 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGCA------ATG 446647
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961
|| || |||| ||||| |||||||| |||||||| ||||| ||||| ||||| || | |
Sbjct 446646 TGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGA 446587
Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021
||||| || |||| |||||||| | ||| || ||| ||| || | ||||| ||||
Sbjct 446586 ATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGGAATT 446527
Query 77022 TTTG-TAT--TTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078
| || ||| | || || || ||| || ||||| ||| || || || ||||||
Sbjct 446526 TCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATCTGATTTTTCATCTCTTCATTC 446467
Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138
||||| | ||| | | | || | || | |||||||| || || |||||||||||
Sbjct 446466 CACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCTCCT 446407
Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198
||||| ||||| |||||||| || || |||||| ||||||| | || ||||| ||||||
Sbjct 446406 GACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTCAATGGACTCATTATTTCCC 446347
Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258
| || |||||||| |||||||| ||||| || || | | |||||||||||| | ||||
Sbjct 446346 AGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTATTTCTTATACCA 446287
>seq93
Length=2374459
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | ||
Sbjct 38943 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 39002
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||| || |||||||| |||||||| ||||| || || | | |||||||
Sbjct 39003 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 39062
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 39063 TTTCTTATACCAT 39075
Score = 105 bits (116), Expect = 9e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| | |||||||| || |||
Sbjct 59619 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 59678
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || ||||| || || | ||| | |||||||
Sbjct 59679 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 59738
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
||||| || ||||||||| ||
Sbjct 59739 ATATGTTGTGGTCTTTCAGCC 59759
Score = 89.7 bits (98), Expect = 7e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | ||
Sbjct 52515 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 52574
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| |||||||| | || || ||||||| ||
Sbjct 52575 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 52634
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| | || || || | | ||||||||
Sbjct 52635 TCCAAGTAAATAGCAAATGCCCCAGGTCG 52663
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974
||||||| |||||||| ||||||||||| ||||||| ||||| || |||||||| ||
Sbjct 52055 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 52114
Query 77975 CATCAATGACCAGT 77988
|||||| |||||||
Sbjct 52115 CATCAAAGACCAGT 52128
>seq3
Length=9954913
Score = 125 bits (138), Expect = 1e-23
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| |||
Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||||| || ||||| ||||||||||| || |||||||| || ||||| ||
Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGC 27110
Score = 86.0 bits (94), Expect = 9e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||||||| ||||||||| || | ||||||||||| || || || || |
Sbjct 25339 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGT 25280
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|||| || || || || || || || ||||| | |||||||| ||||| || ||
Sbjct 25279 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 25225
>seq794
Length=452738
Score = 111 bits (122), Expect = 2e-19
Identities = 246/362 (68%), Gaps = 18/362 (5%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | || ||| ||| |||||| | ||| ||||||
Sbjct 433754 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTT-AGTGTCATCTAAAACTTGAACTTCC 433696
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | ||||||||| | || | || | | || || || || |||| |||||| | ||
Sbjct 433695 TCTATTTCAGGATAAAAAATCCATTCACAAATGAGCTGTGCAATTCGGTCACCCTTTTTG 433636
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | || || ||| || | ||| | || ||||| | ||||| ||||||
Sbjct 433635 ACTTCAAACTTTTCCTTGCCAAAATCAAACAGTACAACACCAATATTTCCTCTGTAATCT 433576
Query 46054 TCATCTATTACTCCCCCTCCCACAT---CGATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||||| || || |||| || | || |||| || || |||||| | |||
Sbjct 433575 TCATCTATGACACCAGCTCCTACGTATATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 433516
Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166
|||| ||||||||| ||||| || | || || |||| || ||||| | |||
Sbjct 433515 GCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATTTGAATGTCGGTTTTCA-CAA 433461
Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224
||||||| ||| || | || || || || |||| ||| | ||||| |||||
Sbjct 433460 -GGATTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACAGTACAGGTCATAGCCTGCG 433402
Query 46225 GC 46226
||
Sbjct 433401 GC 433400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694117936324960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |