Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq782 277 3e-69
seq93 136 6e-27
seq3 120 4e-22
seq514 102 1e-16
seq794 84.2 3e-11
>seq782
Length=486663
Score = 277 bits (306), Expect = 3e-69
Identities = 353/483 (73%), Gaps = 15/483 (3%)
Strand=Plus/Minus
Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436
|||||||| || ||| | |||||| ||| | || || ||||||||||| |||| |
Sbjct 446760 GTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATACATACCAGTCTTTAAA 446701
Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496
||| | |||| |||||||| ||||| || || |||||| ||| | | | ||
Sbjct 446700 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGCA------ATG 446647
Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556
|| || |||| ||||| |||||||| |||||||| ||||| ||||| ||||| || | |
Sbjct 446646 TGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGA 446587
Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616
||||| || |||| |||||||| | ||| || ||| ||| || | ||||| ||||
Sbjct 446586 ATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGGAATT 446527
Query 75617 TTTG-TAT--TTTGAATGGATCCGCCATCAGAT---ATAATTGTATTCTTGATCTCATCA 75670
| || ||| | || || || ||||| || ||||| ||| || ||||| |||
Sbjct 446526 TCTGATATGCTCTGGATAGA---GCCATTGCATGCAATAATCTGATTTTTCATCTCTTCA 446470
Query 75671 TTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCT 75730
|||||||| ||| | | | || | || | |||||||| ||||| |||||||||
Sbjct 446469 TTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCT 446410
Query 75731 CCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTT 75790
|| ||||| ||||| |||||||| || || |||||| ||||||| | || ||||| |||
Sbjct 446409 CCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTCAATGGACTCATTATTT 446350
Query 75791 CCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGA 75850
|||| || ||||||||||||||||| ||||| || || | | |||||||||||| | |
Sbjct 446349 CCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTATTTCTTATA 446290
Query 75851 CCA 75853
|||
Sbjct 446289 CCA 446287
>seq93
Length=2374459
Score = 136 bits (150), Expect = 6e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | ||
Sbjct 38943 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 39002
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||| || ||||||||||||||||| ||||| || || | | |||||||
Sbjct 39003 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 39062
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 39063 TTTCTTATACCAT 39075
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || ||||| ||||| || ||||| | |||||||| || |||
Sbjct 59619 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 59678
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|||||||||||| | || || ||||| || ||||| || |||| || | |||||||
Sbjct 59679 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 59738
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || |||| |||
Sbjct 59739 ATATGTTGTGGTCTTTC 59755
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/162 (73%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT- 76044
|| || || || || || || || || || |||||||| ||||| || || | ||||||
Sbjct 47826 GCCAGATCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTC 47885
Query 76045 AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104
|| | || | || || |||| ||||||||||| | |||||||| |||||||| ||
Sbjct 47886 AATAACTGG-GCCTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAG 47944
Query 76105 TCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146
|| || |||||||| ||||| || | ||| | ||||| ||
Sbjct 47945 ACCTTGTACTCCAATTCCAATGGGGCGATGGCGTTTATTTGA 47986
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||
Sbjct 52065 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 52124
Query 76580 CA 76581
||
Sbjct 52125 CA 52126
>seq3
Length=9954913
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || ||||||||||| |||||||| ||||| || || |||
Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| || |||||||| || || || ||
Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 27109
Query 46774 ACAA 46777
||||
Sbjct 27108 ACAA 27105
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || ||||| || | ||||||||||| || ||||| |||||||| || ||
Sbjct 25329 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 25270
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| || || || || ||||| | ||||| |||||||| || |||
Sbjct 25269 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 25224
>seq514
Length=1022489
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| |||||||| || || | || |
Sbjct 284461 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 284520
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| | ||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 284521 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 284580
Query 46772 CGAC 46775
| ||
Sbjct 284581 CCAC 284584
Score = 87.8 bits (96), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| ||||||| ||| | ||||||||| ||||| || ||| |
Sbjct 301457 TACCTCTTCTGCTGTCCAGAAGGACGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGG 301516
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|| ||||| ||||| || |||||||
Sbjct 301517 GTACTGGATTGGAAAGATGACAAATC 301542
>seq794
Length=452738
Score = 84.2 bits (92), Expect = 3e-11
Identities = 214/321 (67%), Gaps = 15/321 (5%)
Strand=Plus/Minus
Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461
||||| | ||| |||||||||| ||||||||| | || | || | | || || || ||
Sbjct 433714 ATCTAAAACTTGAACTTCCTCTATTTCAGGATAAAAAATCCATTCACAAATGAGCTGTGC 433655
Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521
|||| ||||| | || | || ||| | || || ||| || | || | || ||
Sbjct 433654 AATTCGGTCACCCTTTTTGACTTCAAACTTTTCCTTGCCAAAATCAAACAGTACAACACC 433595
Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAG 44578
||| || || || |||||||||||||| || ||| |||| || | || ||||
Sbjct 433594 AATATTTCCTCTGTAATCTTCATCTATGACACCAGCTCCTACGTATATGAAGTGTTTTGT 433535
Query 44579 AGAAAGACCCGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATAC 44634
|| | || || | || |||| ||||||||| ||||| || | || ||
Sbjct 433534 AGCCAATCCAGAACGTGGAGCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATTT 433479
Query 44635 GAATATCTGTTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACT 44692
|||| || ||||| | ||| | ||||||| ||| || | || ||||| || ||||
Sbjct 433478 GAATGTCGGTTTTCA-CAA-GGATTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACA 433421
Query 44693 GTATAAATCATATCCTGCCGC 44713
||| | ||||| ||||| ||
Sbjct 433420 GTACAGGTCATAGCCTGCGGC 433400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712369051932480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |