Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq782 277 3e-69 seq93 136 6e-27 seq3 120 4e-22 seq514 102 1e-16 seq794 84.2 3e-11 >seq782 Length=486663 Score = 277 bits (306), Expect = 3e-69 Identities = 353/483 (73%), Gaps = 15/483 (3%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 |||||||| || ||| | |||||| ||| | || || ||||||||||| |||| | Sbjct 446760 GTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATACATACCAGTCTTTAAA 446701 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 ||| | |||| |||||||| ||||| || || |||||| ||| | | | || Sbjct 446700 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGCA------ATG 446647 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 || || |||| ||||| |||||||| |||||||| ||||| ||||| ||||| || | | Sbjct 446646 TGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGA 446587 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 ||||| || |||| |||||||| | ||| || ||| ||| || | ||||| |||| Sbjct 446586 ATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGGAATT 446527 Query 75617 TTTG-TAT--TTTGAATGGATCCGCCATCAGAT---ATAATTGTATTCTTGATCTCATCA 75670 | || ||| | || || || ||||| || ||||| ||| || ||||| ||| Sbjct 446526 TCTGATATGCTCTGGATAGA---GCCATTGCATGCAATAATCTGATTTTTCATCTCTTCA 446470 Query 75671 TTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCT 75730 |||||||| ||| | | | || | || | |||||||| ||||| ||||||||| Sbjct 446469 TTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCT 446410 Query 75731 CCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTT 75790 || ||||| ||||| |||||||| || || |||||| ||||||| | || ||||| ||| Sbjct 446409 CCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTCAATGGACTCATTATTT 446350 Query 75791 CCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGA 75850 |||| || ||||||||||||||||| ||||| || || | | |||||||||||| | | Sbjct 446349 CCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTATTTCTTATA 446290 Query 75851 CCA 75853 ||| Sbjct 446289 CCA 446287 >seq93 Length=2374459 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | || Sbjct 38943 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 39002 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| || ||||||||||||||||| ||||| || || | | ||||||| Sbjct 39003 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 39062 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 39063 TTTCTTATACCAT 39075 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| | |||||||| || ||| Sbjct 59619 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 59678 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 59679 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 59738 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 59739 ATATGTTGTGGTCTTTC 59755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT- 76044 || || || || || || || || || || |||||||| ||||| || || | |||||| Sbjct 47826 GCCAGATCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTC 47885 Query 76045 AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104 || | || | || || |||| ||||||||||| | |||||||| |||||||| || Sbjct 47886 AATAACTGG-GCCTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAG 47944 Query 76105 TCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || || |||||||| ||||| || | ||| | ||||| || Sbjct 47945 ACCTTGTACTCCAATTCCAATGGGGCGATGGCGTTTATTTGA 47986 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 52065 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 52124 Query 76580 CA 76581 || Sbjct 52125 CA 52126 >seq3 Length=9954913 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| || || ||| Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || |||||||| || || || || Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 27109 Query 46774 ACAA 46777 |||| Sbjct 27108 ACAA 27105 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || ||||| || | ||||||||||| || ||||| |||||||| || || Sbjct 25329 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 25270 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||||||| || ||| Sbjct 25269 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 25224 >seq514 Length=1022489 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 284461 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 284520 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | | ||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 284521 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 284580 Query 46772 CGAC 46775 | || Sbjct 284581 CCAC 284584 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| ||||||| ||| | ||||||||| ||||| || ||| | Sbjct 301457 TACCTCTTCTGCTGTCCAGAAGGACGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGG 301516 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 301517 GTACTGGATTGGAAAGATGACAAATC 301542 >seq794 Length=452738 Score = 84.2 bits (92), Expect = 3e-11 Identities = 214/321 (67%), Gaps = 15/321 (5%) Strand=Plus/Minus Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461 ||||| | ||| |||||||||| ||||||||| | || | || | | || || || || Sbjct 433714 ATCTAAAACTTGAACTTCCTCTATTTCAGGATAAAAAATCCATTCACAAATGAGCTGTGC 433655 Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521 |||| ||||| | || | || ||| | || || ||| || | || | || || Sbjct 433654 AATTCGGTCACCCTTTTTGACTTCAAACTTTTCCTTGCCAAAATCAAACAGTACAACACC 433595 Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAG 44578 ||| || || || |||||||||||||| || ||| |||| || | || |||| Sbjct 433594 AATATTTCCTCTGTAATCTTCATCTATGACACCAGCTCCTACGTATATGAAGTGTTTTGT 433535 Query 44579 AGAAAGACCCGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATAC 44634 || | || || | || |||| ||||||||| ||||| || | || || Sbjct 433534 AGCCAATCCAGAACGTGGAGCTACTCTTCCATAGCACCCAGAA----GGAAGAGCTATTT 433479 Query 44635 GAATATCTGTTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACT 44692 |||| || ||||| | ||| | ||||||| ||| || | || ||||| || |||| Sbjct 433478 GAATGTCGGTTTTCA-CAA-GGATTTTCTCCATAGGTGGTACTGTGTAATCATAGGCACA 433421 Query 44693 GTATAAATCATATCCTGCCGC 44713 ||| | ||||| ||||| || Sbjct 433420 GTACAGGTCATAGCCTGCGGC 433400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712369051932480