Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq135 179 5e-40 seq79 100 4e-16 >seq135 Length=5734681 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||||||| |||||||||||| || ||||| || ||||| ||||| Sbjct 1835266 GTCTGGAACAACCGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1835325 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||| | |||||| || ||||| |||||||| || || || ||||| ||||| Sbjct 1835326 CTGTTATGTTCTCGGAGCCAAATCGTGGCATACATCATCAGACCCGGCACCAGACCAAAC 1835385 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || ||| || || | || ||||||||||| | | Sbjct 1835386 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 1835445 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 1835446 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 1835494 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 1836379 TCTTACCCCATGCCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 1836438 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| || || ||||||||||| || Sbjct 1836439 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGGTC 1836498 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || || || |||| |||||| ||||||||||| | | ||| || |||| Sbjct 1836499 AGGGACAAACGTTCTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAGCTC 1836558 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| |||||||| Sbjct 1836559 TTTCTTTCCTGAAAAACGAGAA 1836580 Score = 96.9 bits (106), Expect = 5e-15 Identities = 210/305 (69%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 8941 ACACTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGA 9000 || ||||| | ||| || ||||| | |||| ||||| || | |||||||| || || Sbjct 1834645 ACGCTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGT 1834704 Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAAGTTAACG-TAGTCATACTT-TGTTTTATCAA 9058 ||| | || || |||||||||| ||| | || | || |||| || | | |||| Sbjct 1834705 TCCATTAACATAGAGTTGTTGTAGA-GAAACTGTCGATGGTTGTACTCCTGGTCT-TCAA 1834762 Query 9059 TCTCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATA 9118 ||| ||| | || |||| ||| | ||||||||| || | | |||||||||| | | | Sbjct 1834763 TCTGAAAGGTGTCAGGCAGGAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAA 1834822 Query 9119 TACGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGA 9177 | || |||||||||||||| | | ||| ||||| || || | |||| ||| | Sbjct 1834823 TGCGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTG 1834881 Query 9178 AAATGGTAGCCGCTGAGCTGCTGAACGTA---TTGCGTCACGATAATGTTGATGGTTTCC 9234 || || ||||| || | ||||| ||||| || ||||| || || |||||||| Sbjct 1834882 AAGTGATAGCCACTCAAGTGCTGTACGTAGTCTTCTATCACG---ATCTTAATGGTTTCT 1834938 Query 9235 CCGAT 9239 || || Sbjct 1834939 CCTAT 1834943 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| ||||| |||| || || ||||| ||| || | Sbjct 1836867 TCACCTTTCACGCCCATGGGAGTGGGACAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTA 1836926 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||| ||| || || |||||||||||| || | || | || ||||| | Sbjct 1836927 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 1836986 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||||| ||||| |||| Sbjct 1836987 GGCGGGCTGTCAATCAAATGTGATCTGGCTGA 1837018 >seq79 Length=6501104 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||||| |||||| || | |||||||| || ||||| || | ||| || || Sbjct 6416524 TCACCGATAAGGATGAGGCGGGCCGTCTGGAAAAGCTGCTCATCGCCCCAGGTGGGGTGC 6416465 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| |||||||| | | Sbjct 6416464 TCAGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGGGTGGCGTAAAGC 6416405 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || ||||||| Sbjct 6416404 ATGAGCCCAGGAAGCAGTCCAAACACCTCCTGGCCCACAGCCA 6416362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716308325658560