Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq135 179 5e-40
seq79 100 4e-16
>seq135
Length=5734681
Score = 179 bits (198), Expect = 5e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| |||||||| |||||||||||| || ||||| || ||||| |||||
Sbjct 1835266 GTCTGGAACAACCGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1835325
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||| | |||||| || ||||| |||||||| || || || ||||| |||||
Sbjct 1835326 CTGTTATGTTCTCGGAGCCAAATCGTGGCATACATCATCAGACCCGGCACCAGACCAAAC 1835385
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | |||| || ||| || || | || ||||||||||| | |
Sbjct 1835386 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 1835445
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | ||| |||||||| || || ||||| ||||
Sbjct 1835446 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 1835494
Score = 131 bits (144), Expect = 2e-25
Identities = 150/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 1836379 TCTTACCCCATGCCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 1836438
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| || || ||||||||||| ||
Sbjct 1836439 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGGTC 1836498
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| || || |||| |||||| ||||||||||| | | ||| || ||||
Sbjct 1836499 AGGGACAAACGTTCTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAGCTC 1836558
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | || |||| ||||||||
Sbjct 1836559 TTTCTTTCCTGAAAAACGAGAA 1836580
Score = 96.9 bits (106), Expect = 5e-15
Identities = 210/305 (69%), Gaps = 12/305 (4%)
Strand=Plus/Plus
Query 8941 ACACTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGA 9000
|| ||||| | ||| || ||||| | |||| ||||| || | |||||||| || ||
Sbjct 1834645 ACGCTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGT 1834704
Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAAGTTAACG-TAGTCATACTT-TGTTTTATCAA 9058
||| | || || |||||||||| ||| | || | || |||| || | | ||||
Sbjct 1834705 TCCATTAACATAGAGTTGTTGTAGA-GAAACTGTCGATGGTTGTACTCCTGGTCT-TCAA 1834762
Query 9059 TCTCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATA 9118
||| ||| | || |||| ||| | ||||||||| || | | |||||||||| | | |
Sbjct 1834763 TCTGAAAGGTGTCAGGCAGGAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAA 1834822
Query 9119 TACGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGA 9177
| || |||||||||||||| | | ||| ||||| || || | |||| ||| |
Sbjct 1834823 TGCGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTG 1834881
Query 9178 AAATGGTAGCCGCTGAGCTGCTGAACGTA---TTGCGTCACGATAATGTTGATGGTTTCC 9234
|| || ||||| || | ||||| ||||| || ||||| || || ||||||||
Sbjct 1834882 AAGTGATAGCCACTCAAGTGCTGTACGTAGTCTTCTATCACG---ATCTTAATGGTTTCT 1834938
Query 9235 CCGAT 9239
|| ||
Sbjct 1834939 CCTAT 1834943
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | ||||| ||||| |||| || || ||||| ||| || |
Sbjct 1836867 TCACCTTTCACGCCCATGGGAGTGGGACAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTA 1836926
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||||| ||| || || |||||||||||| || | || | || ||||| |
Sbjct 1836927 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 1836986
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| |||||||||||||||| ||||| ||||
Sbjct 1836987 GGCGGGCTGTCAATCAAATGTGATCTGGCTGA 1837018
>seq79
Length=6501104
Score = 100 bits (110), Expect = 4e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||||| |||||| || | |||||||| || ||||| || | ||| || ||
Sbjct 6416524 TCACCGATAAGGATGAGGCGGGCCGTCTGGAAAAGCTGCTCATCGCCCCAGGTGGGGTGC 6416465
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | ||||||| |||||||| | |
Sbjct 6416464 TCAGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGGGTGGCGTAAAGC 6416405
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| || || |||||||
Sbjct 6416404 ATGAGCCCAGGAAGCAGTCCAAACACCTCCTGGCCCACAGCCA 6416362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716308325658560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |