Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq475 129 5e-25
seq273 120 3e-22
seq683 116 3e-21
seq25626 109 5e-19
seq19201 109 5e-19
seq21504 105 6e-18
seq10281 98.7 9e-16
seq152 98.7 9e-16
seq48301 95.1 1e-14
>seq475
Length=1570329
Score = 129 bits (142), Expect = 5e-25
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| |||||
Sbjct 1256110 ACAGCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTC 1256051
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| | || || ||||||||||| || || || || | ||| ||||| |
Sbjct 1256050 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGG 1255991
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||| | || |||||| ||| ||| || ||||| | | |||||||| | |||
Sbjct 1255990 GGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTC 1255931
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||||| || || || || || ||||| ||||| |||||||| ||||| ||
Sbjct 1255930 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 1255877
>seq273
Length=4066651
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| |||| ||
Sbjct 887207 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 887266
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| ||| |||||||| || |||| | ||| ||||| | ||| | || ||| ||||| |
Sbjct 887267 AACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 887326
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||||||||||| || || || |||
Sbjct 887327 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 887386
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||||| || || ||||||||
Sbjct 887387 CCGGTCAAGGTCTTCACAAAGATCTGCAT 887415
>seq683
Length=758919
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || |||| | ||||| ||||| ||| ||| ||||| ||||||||||| |||
Sbjct 117125 CCACCCCGCAGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAG 117184
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||| ||||| || || ||||| |||| ||||| | ||
Sbjct 117185 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGG 117244
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||| | || |||| |||| || | | |||||| || | || ||
Sbjct 117245 ATGCCCTCCTTGT-CTTGGATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGAC 117303
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || |||||||| || || || || ||||||||
Sbjct 117304 CTCGAGTGTGATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq25626
Length=405
Score = 109 bits (120), Expect = 5e-19
Identities = 144/196 (73%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||||||||| ||||||| | |||||| |||| || |||||||| ||||||||
Sbjct 321 CTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAA 262
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|||| | ||| ||||||| |||| | |||||||||| ||| | || || | |||
Sbjct 261 GATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGT 203
Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846
| | ||||| ||| ||| ||||||| || || || || || || || ||||
Sbjct 202 TATCAATGGTGTCTGAGCT---CTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCT 146
Query 41847 TTACGAAAATCTGCAT 41862
| || || ||||||||
Sbjct 145 TCACAAAGATCTGCAT 130
>seq19201
Length=536
Score = 109 bits (120), Expect = 5e-19
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||| || ||||| ||||||||| ||||| || || | ||| || |
Sbjct 288 AGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTT 347
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||| || ||||||||||| ||||| || |||| || | | |||
Sbjct 348 CCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCC 407
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| ||| || |||| || | | | |||||| ||| || ||||| | ||
Sbjct 408 TTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGT 466
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| || ||||| || || || || || |||||||| ||
Sbjct 467 TATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508
>seq21504
Length=484
Score = 105 bits (116), Expect = 6e-18
Identities = 165/232 (71%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || |||||||| ||||| |||||||
Sbjct 469 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCC 410
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || ||||||||||| ||||| || || ||||| ||||||| ||
Sbjct 409 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 350
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| || |||||||||| ||| |||| |||| ||| | | ||||| ||| |||
Sbjct 349 ATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCT---CTC 294
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| || | || || || || || || || ||||| ||||| || ||||||
Sbjct 293 CACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242
>seq10281
Length=966
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||| ||||| || || ||||||||| ||||| ||||| | || || || | || ||
Sbjct 472 CACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTC 413
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
||||||||| ||||| || |||| | || ||||||| || | | |||||| | | |
Sbjct 412 GAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTAT-CTT 354
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
|| |||| || | ||| | | || |||||| ||| ||||| | || ||||| |
Sbjct 353 GAATTTTAGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCT 294
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| ||||| || || || ||||| ||||||||
Sbjct 293 TCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| || |||| || ||||| ||||||||| ||||| ||||| |
Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| || || |||| ||||||||||| || || || |||| | ||| || |||| ||
Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| || || |||| | || |||| |||| ||| | | | || || ||| ||
Sbjct 598 GATGCCTTCTTTGT-CTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCT---CT 543
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||||| || ||||| || ||||||| || || || || || |||||
Sbjct 542 CCACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| || |||||| ||| ||||| ||||| ||||||| | || || |||| |||
Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCG 184
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| ||||||||||| || || | ||| ||||||| || | || ||||| ||| ||
Sbjct 183 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCC-TG 125
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829
| || ||| |||| | | | ||||| ||| |||||||| | || || ||
Sbjct 124 GATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGT 68
Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||| | ||| ||||||| ||
Sbjct 67 CTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTT 32
>seq152
Length=4697258
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || | ||| | | ||||| ||| ||| ||||||||| |||||| ||||||
Sbjct 3919884 CGCCCCCCTGCAGATGAAGCACCAAGTGCCAAGTGGACTCCTTCTGGATGTTAGAGTCGG 3919943
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
|||| |||| | || || ||||||||||| || || ||||| |||| ||||| | |
Sbjct 3919944 AGAGAGTGCAGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTG 3920003
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813
| | || |||||||| | || |||| |||| || | ||||||| || | |||
Sbjct 3920004 GGATGCCCTCCTTGT-CTTGGATTTTAGCTTTGGCG--TTCTCAGTGTCACTGGGCTCGG 3920060
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861
|||| | | || || || ||| || ||||| || || |||||||
Sbjct 3920061 CCTCGAGTGGGATGGTCTTGCCCACAAGGGTCTTCACAAAGATCTGCA 3920108
>seq48301
Length=236
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| ||||| ||||| |
Sbjct 218 CCACCACGAAGACGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 159
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || ||||||||||| || ||||| || || || || ||||||| ||||
Sbjct 158 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGA 99
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| || | || |||| ||| | | | ||| ||| ||||||
Sbjct 98 ATACCTTCCTTGTCC-TGGATCTTAGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCAC 40
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
||| | || || || || || |||| ||||| |||||
Sbjct 39 CTCAAGAGTGATGGTCTTCCCGGTCAATGTCTTAACGAA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461937398706800
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