Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq475 129 5e-25 seq273 120 3e-22 seq683 116 3e-21 seq25626 109 5e-19 seq19201 109 5e-19 seq21504 105 6e-18 seq10281 98.7 9e-16 seq152 98.7 9e-16 seq48301 95.1 1e-14 >seq475 Length=1570329 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| ||||| Sbjct 1256110 ACAGCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTC 1256051 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 1256050 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGG 1255991 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || |||||| ||| ||| || ||||| | | |||||||| | ||| Sbjct 1255990 GGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTC 1255931 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || ||||| ||||| |||||||| ||||| || Sbjct 1255930 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 1255877 >seq273 Length=4066651 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| |||| || Sbjct 887207 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 887266 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||| |||||||| || |||| | ||| ||||| | ||| | || ||| ||||| | Sbjct 887267 AACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 887326 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 887327 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 887386 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || || |||||||| Sbjct 887387 CCGGTCAAGGTCTTCACAAAGATCTGCAT 887415 >seq683 Length=758919 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || |||| | ||||| ||||| ||| ||| ||||| ||||||||||| ||| Sbjct 117125 CCACCCCGCAGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAG 117184 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| ||||| || || ||||| |||| ||||| | || Sbjct 117185 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGG 117244 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || |||| |||| || | | |||||| || | || || Sbjct 117245 ATGCCCTCCTTGT-CTTGGATTTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGAC 117303 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || |||||||| || || || || |||||||| Sbjct 117304 CTCGAGTGTGATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq25626 Length=405 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||||| | |||||| |||| || |||||||| |||||||| Sbjct 321 CTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAA 262 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| | ||| ||||||| |||| | |||||||||| ||| | || || | ||| Sbjct 261 GATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGT 203 Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | | ||||| ||| ||| ||||||| || || || || || || || |||| Sbjct 202 TATCAATGGTGTCTGAGCT---CTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCT 146 Query 41847 TTACGAAAATCTGCAT 41862 | || || |||||||| Sbjct 145 TCACAAAGATCTGCAT 130 >seq19201 Length=536 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || ||||| ||||||||| ||||| || || | ||| || | Sbjct 288 AGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTT 347 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || ||||||||||| ||||| || |||| || | | ||| Sbjct 348 CCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCC 407 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| || |||| || | | | |||||| ||| || ||||| | || Sbjct 408 TTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGT 466 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| || ||||| || || || || || |||||||| || Sbjct 467 TATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508 >seq21504 Length=484 Score = 105 bits (116), Expect = 6e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||||| ||||| ||||||| Sbjct 469 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCC 410 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || ||||||||||| ||||| || || ||||| ||||||| || Sbjct 409 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 350 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| ||| |||| |||| ||| | | ||||| ||| ||| Sbjct 349 ATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCT---CTC 294 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| || | || || || || || || || ||||| ||||| || |||||| Sbjct 293 CACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242 >seq10281 Length=966 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||| || || ||||||||| ||||| ||||| | || || || | || || Sbjct 472 CACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTC 413 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||| ||||| || |||| | || ||||||| || | | |||||| | | | Sbjct 412 GAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTAT-CTT 354 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| || | ||| | | || |||||| ||| ||||| | || ||||| | Sbjct 353 GAATTTTAGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCT 294 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| || || || ||||| |||||||| Sbjct 293 TCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| || ||||| ||||||||| ||||| ||||| | Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || |||| ||||||||||| || || || |||| | ||| || |||| || Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | || || |||| | || |||| |||| ||| | | | || || ||| || Sbjct 598 GATGCCTTCTTTGT-CTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCT---CT 543 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || ||||| || ||||||| || || || || || ||||| Sbjct 542 CCACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || |||||| ||| ||||| ||||| ||||||| | || || |||| ||| Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTTCGGCCGTCTTCG 184 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||||||||| || || | ||| ||||||| || | || ||||| ||| || Sbjct 183 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCC-TG 125 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | || ||| |||| | | | ||||| ||| |||||||| | || || || Sbjct 124 GATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGT 68 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| | ||| ||||||| || Sbjct 67 CTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTT 32 >seq152 Length=4697258 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | ||| | | ||||| ||| ||| ||||||||| |||||| |||||| Sbjct 3919884 CGCCCCCCTGCAGATGAAGCACCAAGTGCCAAGTGGACTCCTTCTGGATGTTAGAGTCGG 3919943 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||| |||| | || || ||||||||||| || || ||||| |||| ||||| | | Sbjct 3919944 AGAGAGTGCAGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTG 3920003 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | || |||||||| | || |||| |||| || | ||||||| || | ||| Sbjct 3920004 GGATGCCCTCCTTGT-CTTGGATTTTAGCTTTGGCG--TTCTCAGTGTCACTGGGCTCGG 3920060 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861 |||| | | || || || ||| || ||||| || || ||||||| Sbjct 3920061 CCTCGAGTGGGATGGTCTTGCCCACAAGGGTCTTCACAAAGATCTGCA 3920108 >seq48301 Length=236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 218 CCACCACGAAGACGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 159 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || ||||||||||| || ||||| || || || || ||||||| |||| Sbjct 158 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGA 99 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | || |||| ||| | | | ||| ||| |||||| Sbjct 98 ATACCTTCCTTGTCC-TGGATCTTAGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCAC 40 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 ||| | || || || || || |||| ||||| ||||| Sbjct 39 CTCAAGAGTGATGGTCTTCCCGGTCAATGTCTTAACGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461937398706800