Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1669 114 1e-20 seq654 105 7e-18 >seq1669 Length=5184857 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||| Sbjct 4063060 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 4063001 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||||||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 4063000 TTAACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4062941 Query 16344 C 16344 | Sbjct 4062940 C 4062940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || || ||||| |||||||| |||||||||||||||||||| Sbjct 4069496 AACTCGTTTCTCAAAGAAATTTGTCTTTCCTTCTAAAGAAATATTTTCCATAAAATCAAA 4069437 Query 15985 GGGATT 15990 |||||| Sbjct 4069436 GGGATT 4069431 >seq654 Length=93227 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 54044 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 53985 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||||| ||||| || || |||||||| || || || || | ||||||||| Sbjct 53984 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAGCG 53925 Query 16346 A 16346 | Sbjct 53924 A 53924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398482226800