Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1666 183 2e-41 seq213 111 1e-19 >seq1666 Length=2131315 Score = 183 bits (202), Expect = 2e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || || || |||||||| ||| |||| ||||||||||| ||| || || Sbjct 96472 ACAATGGGGGTGACACAGGTGCAGCCGACATTCACCAGCATCTTCTCCAGCTGGAAGGAG 96531 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 || |||||| | ||| || | | |||| || || |||||||| ||||| || || ||| Sbjct 96532 TTGGGGCAGTGCTGAGGCTGTCTTCGCAGGACCAGGATCTCTTGCTGGATGGGAACGGAG 96591 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||| ||||| |||||| ||||| |||||||||||||| |||| ||| |||||||| Sbjct 96592 TTCAAGTGGTGGTCTACCTTCCCTTCAGCATTAACACAGTACAAGTGGCGGCACTTTGCC 96651 Query 27132 TCCCAAATCACAGAGGGATATCTATC 27157 ||||| ||||||||||||||||| || Sbjct 96652 TCCCAGATCACAGAGGGATATCTCTC 96677 >seq213 Length=3162417 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4167 ATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTG 4226 ||| |||||||| ||||| | |||||| |||||||| |||||| || ||| ||||| || Sbjct 3138230 ATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTACTTTTTAACTCTGGTTG 3138171 Query 4227 TTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAG 4286 || |||||||||| |||||||| | ||| || || | ||||||||||| |||||| | Sbjct 3138170 CTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGAGG 3138111 Query 4287 CTCC 4290 ||| Sbjct 3138110 TTCC 3138107 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| |||||||||||||||||||||||||| | |||| Sbjct 3147406 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 3147347 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 ||||| || |||| |||||||||| ||| ||| Sbjct 3147346 TCTTCCTGGACATCGGAAAGAACACCTGGGTAT 3147314 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||||||||| |||||| |||||| || ||||| Sbjct 3140480 AAGTTTATATTTCCCCAAATCAACTTCTGGAAAAAATATGTCACTTTCAAATTCCTGCAT 3140421 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| || ||||| ||| ||| || || ||| | |||| ||||| || Sbjct 3140420 GATCCTTGTGACAAATAGTCTAATATGGCCTGGCTTGTTCATGGCTTCCTT 3140370 Score = 93.3 bits (102), Expect = 3e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| |||| |||||||||| | |||||||||| | |||||||| || |||||| || Sbjct 3131266 CTTGAGTTTTCTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCATGGG 3131207 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| || ||||| ||||| | ||||||||||| |||||| |||| || Sbjct 3131206 AATGGACAACCAGGTCTTCCTGCCCATAATCACCAAATTCCTTTTACCT 3131158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361240237154990