Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1424 91.5 1e-13 >seq1424 Length=2309046 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 28951 ATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA 29010 |||| || ||||||||||| ||| | || || |||| ||||| ||||| ||| ||| Sbjct 23676 ATAG-GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAG 23618 Query 29011 CGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGC 29070 ||||||| || || | | || | ||| || || ||||| ||||| | | Sbjct 23617 TGGAACCCAGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATCC 23558 Query 29071 CCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGG 29130 | ||| || || || || |||||||| ||||| || ||||||||| | ||| | Sbjct 23557 CTCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTT 23498 Query 29131 CCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 | |||||||| ||||||||||| || || || || |||| Sbjct 23497 CTGATTACAACATTCAGAAGGAGTCGACCCTGCATCTGGT 23458 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || |||| ||||| ||||| ||| ||| ||||||| Sbjct 22982 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 22923 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| ||||| | || ||| || Sbjct 22922 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 22863 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| |||||||| ||||| ||| | ||| | | |||||||| Sbjct 22862 CAGAGGCTTATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 22803 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||| || || || || || |||| |||| Sbjct 22802 ATTCAGAAAGAGTCGACCCTGCATCTGGTCCTACG 22768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428323001340950