Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1013 206 3e-48 seq2337 168 8e-37 seq1989 152 6e-32 seq1960 129 7e-25 >seq1013 Length=2538122 Score = 206 bits (228), Expect = 3e-48 Identities = 575/868 (66%), Gaps = 27/868 (3%) Strand=Plus/Plus Query 9500 TTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAA 9559 |||| || | |||||| | | ||| || | || ||| || ||||| | || | Sbjct 1776664 TTGGCCTGGTAGGCAATGTGATGGTGCTGCTGATCCTCACAAAATACAGGCGCCTCCGGA 1776723 Query 9560 ACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTT 9619 ||| | ||||| | || | ||||||||| | || |||||||| ||||| | || Sbjct 1776724 TCCTGCCCAACATCTACTTGCTCAACTTGGCAGTCTCCGACTTGCTCTTTCTGTCGACCC 1776783 Query 9620 TGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGT 9679 ||||||| ||||| |||| | | || | || | ||| |||||| | | ||| Sbjct 1776784 TGCCATTCTGGATTTACTACGTCA-AGTGGAACA--ACTGGGTTTTTGGCCACTGCATGT 1776840 Query 9680 GTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCC 9739 | || ||||| || | | || |||| ||||| | || |||| |||||||| Sbjct 1776841 GCAAGTTGCTCTCCGGCCTCTATTTCATGGGCTTGTACGGGGAGTGTTTTTTCATCATCC 1776900 Query 9740 TGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAA 9799 |||| || ||||| |||| || || | ||| |||| || ||| || |||| | | Sbjct 1776901 TGCTGACCATAGACCGGTACCTGGCCATCGTCCATGCCGTGTGTGCCCTGCGGTTCCGGA 1776960 Query 9800 CAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCC 9858 | || || | ||| || | | | |||| |||||| | ||| |||| | | || | Sbjct 1776961 CCGTCACTTTTGGGATCCTCAGCAGTGTCCTCACCTGGGTCTTGGTAGGGCTAGCTG-CG 1777019 Query 9859 CTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG--GTTCAGTGTGATC 9916 |||||||| || |||| || ||| || || || | | |||| || | || Sbjct 1777020 CTCCCTGAGCTTGTCTTCCAGAAGTCCCAGGAGGATTCTGAGATGTTGTTCTGTA-GTTC 1777078 Query 9917 -CTTACTACCCAGAGATGTCTACAAATGTT--TGGAGGCGCGCCCACGTTGCAAAGGTGA 9973 ||| ||||| ||| | | | || |||| || || | || | || | Sbjct 1777079 ACTT--TACCCGGAG--GGCGAGGAAGACACCTGGAAACGGTTTCAGGCTGTCAGAGTCA 1777134 Query 9974 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 10033 |||||| ||||| | ||||||||||| ||||||| |||||||| | ||| || | Sbjct 1777135 ATATGTTTTGTCTCGTGCTGCCTCTGCTCGTTATGGCCGTCTGCTATACCGGAATCATTA 1777194 Query 10034 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 10093 || ||| ||| ||||||| |||| |||| ||||||||||| ||||||| ||||||| Sbjct 1777195 AAACGCTGATGAAATGCCCCAGTAAGAGGAAGGACAAGGCCATCCGGCTCATTTTTGTCA 1777254 Query 10094 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 10153 ||||||||| || ||| |||| ||| | ||||||||| | |||||| | | || | Sbjct 1777255 TCATGGTGGTCTTTTTCCTTTTCTGGGCCCCCTACAACCTGGTTCTCTTTTTCAACACTT 1777314 Query 10154 TTC-ACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTA-----ACTTGGACATGG 10207 ||| | ||| |||||| || || || ||||||| | | ||||| ||| Sbjct 1777315 TTCAAAGCA--TCTTCTT----TGAGATGAGCTGTGAGCAGAACAAACAGCTGGACGTGG 1777368 Query 10208 CTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACG 10267 | || | | | ||| | | |||||||| ||||| || ||||||| |||||||||| Sbjct 1777369 CCCTCCAGGTGACAGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCTGTGATCTACG 1777428 Query 10268 CGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCA 10327 | ||||| || |||||||| | |||| ||||||||||| || | |||||| Sbjct 1777429 CCTTCGTCGGCGAGAAGTTCCTGGGGTACCTTCGCCACTTCTTCCGCAGACAAGTGGCCC 1777488 Query 10328 TCTACCTCTGCAAGTACATCCCCTTCCT 10355 | ||| |||| || ||||||||||| Sbjct 1777489 TGCGCCTGGGCAAATATATCCCCTTCCT 1777516 Score = 206 bits (228), Expect = 3e-48 Identities = 575/868 (66%), Gaps = 27/868 (3%) Strand=Plus/Plus Query 176386 TTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAA 176445 |||| || | |||||| | | ||| || | || ||| || ||||| | || | Sbjct 1776664 TTGGCCTGGTAGGCAATGTGATGGTGCTGCTGATCCTCACAAAATACAGGCGCCTCCGGA 1776723 Query 176446 ACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTT 176505 ||| | ||||| | || | ||||||||| | || |||||||| ||||| | || Sbjct 1776724 TCCTGCCCAACATCTACTTGCTCAACTTGGCAGTCTCCGACTTGCTCTTTCTGTCGACCC 1776783 Query 176506 TGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGT 176565 ||||||| ||||| |||| | | || | || | ||| |||||| | | ||| Sbjct 1776784 TGCCATTCTGGATTTACTACGTCA-AGTGGAACA--ACTGGGTTTTTGGCCACTGCATGT 1776840 Query 176566 GTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCC 176625 | || ||||| || | | || |||| ||||| | || |||| |||||||| Sbjct 1776841 GCAAGTTGCTCTCCGGCCTCTATTTCATGGGCTTGTACGGGGAGTGTTTTTTCATCATCC 1776900 Query 176626 TGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAA 176685 |||| || ||||| |||| || || | ||| |||| || ||| || |||| | | Sbjct 1776901 TGCTGACCATAGACCGGTACCTGGCCATCGTCCATGCCGTGTGTGCCCTGCGGTTCCGGA 1776960 Query 176686 CAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCC 176744 | || || | ||| || | | | |||| |||||| | ||| |||| | | || | Sbjct 1776961 CCGTCACTTTTGGGATCCTCAGCAGTGTCCTCACCTGGGTCTTGGTAGGGCTAGCTG-CG 1777019 Query 176745 CTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG--GTTCAGTGTGATC 176802 |||||||| || |||| || ||| || || || | | |||| || | || Sbjct 1777020 CTCCCTGAGCTTGTCTTCCAGAAGTCCCAGGAGGATTCTGAGATGTTGTTCTGTA-GTTC 1777078 Query 176803 -CTTACTACCCAGAGATGTCTACAAATGTT--TGGAGGCGCGCCCACGTTGCAAAGGTGA 176859 ||| ||||| ||| | | | || |||| || || | || | || | Sbjct 1777079 ACTT--TACCCGGAG--GGCGAGGAAGACACCTGGAAACGGTTTCAGGCTGTCAGAGTCA 1777134 Query 176860 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 176919 |||||| ||||| | ||||||||||| ||||||| |||||||| | ||| || | Sbjct 1777135 ATATGTTTTGTCTCGTGCTGCCTCTGCTCGTTATGGCCGTCTGCTATACCGGAATCATTA 1777194 Query 176920 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 176979 || ||| ||| ||||||| |||| |||| ||||||||||| ||||||| ||||||| Sbjct 1777195 AAACGCTGATGAAATGCCCCAGTAAGAGGAAGGACAAGGCCATCCGGCTCATTTTTGTCA 1777254 Query 176980 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 177039 ||||||||| || ||| |||| ||| | ||||||||| | |||||| | | || | Sbjct 1777255 TCATGGTGGTCTTTTTCCTTTTCTGGGCCCCCTACAACCTGGTTCTCTTTTTCAACACTT 1777314 Query 177040 TTC-ACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTA-----ACTTGGACATGG 177093 ||| | ||| |||||| || || || ||||||| | | ||||| ||| Sbjct 1777315 TTCAAAGCA--TCTTCTT----TGAGATGAGCTGTGAGCAGAACAAACAGCTGGACGTGG 1777368 Query 177094 CTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACG 177153 | || | | | ||| | | |||||||| ||||| || ||||||| |||||||||| Sbjct 1777369 CCCTCCAGGTGACAGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCTGTGATCTACG 1777428 Query 177154 CGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCA 177213 | ||||| || |||||||| | |||| ||||||||||| || | |||||| Sbjct 1777429 CCTTCGTCGGCGAGAAGTTCCTGGGGTACCTTCGCCACTTCTTCCGCAGACAAGTGGCCC 1777488 Query 177214 TCTACCTCTGCAAGTACATCCCCTTCCT 177241 | ||| |||| || ||||||||||| Sbjct 1777489 TGCGCCTGGGCAAATATATCCCCTTCCT 1777516 >seq2337 Length=679044 Score = 168 bits (186), Expect = 8e-37 Identities = 134/160 (84%), Gaps = 7/160 (4%) Strand=Plus/Minus Query 138081 GCAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATC 138140 |||||||| ||||||| |||||| || || ||||||||||| ||||||||||| | Sbjct 369724 GCAGCGCCGAAGCCTCAGCCTGAGTGTCTTCAGCTTTTCCCCAAGGGAGTTCACGTG--- 369668 Query 138141 CTTTTCCTG--GTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAAC 138198 |||| || ||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 369667 --TTTCTTGATGTCCAGGCTCTGGTTCTCAGCCTGGGGCATCACCTCCTCCAGGTAAAAC 369610 Query 138199 TGGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||| |||| ||| ||||| ||||||||||||| Sbjct 369609 TGGATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 369570 Score = 127 bits (140), Expect = 2e-24 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 ||| ||||||||||| | |||||||||| ||||||||||| ||||||||||||||||| Sbjct 371864 TCATTTTTTCATCTTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 371805 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||||| |||||||||||||| || ||||||| Sbjct 371804 GCTCATGGCTTTGTAGACCCCTTTCTCTTGGAGCT 371770 Score = 91.5 bits (100), Expect = 2e-13 Identities = 63/71 (89%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 138236 CCTTAAAGTCTTCCAGCAGGGACCCGTCCAGCAACATGTTGTCCAGCTGGTCCTTCAT-- 138293 |||||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||| Sbjct 369297 CCTTAAAGTCCTCCAGCAAGGACCCGTTCAGCAATATGTTGTCCAGCTGGTCCTTCATTT 369238 Query 138294 -CTGAAAGAAG 138303 ||| |||||| Sbjct 369237 GCTGCAAGAAG 369227 Score = 89.7 bits (98), Expect = 6e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| | ||| ||| || |||||| || | ||||||||| |||||| ||||||||| Sbjct 368445 AAAGAAAGCCTTCACCTTGTCGAAGGCAGCTCGGAGCTCGTGAAGCATGCTGGGCAGGCT 368386 Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGACTCACTGTCATATTTGTTGTCGGCCCACA 138415 || |||| | || | |||| || | ||||| || | | | | ||||| || Sbjct 368385 GGCTGGGAAGTG-GGTGCAGCTGTTCTCAGACGGGGTGCCCTGGTCTCGGCTGGCCCCCA 368327 Query 138416 CCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGG 138463 ||||||||||||| |||||||| || ||||| | || ||| ||||| Sbjct 368326 CCCCGGCCAGGAGGACCAGGCAGCAGAGCAGTGCTGAGCTGGGCATGG 368279 >seq1989 Length=1255173 Score = 152 bits (168), Expect = 6e-32 Identities = 131/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||| | |||| ||| |||| ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 654427 AGGTCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 654368 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || ||||| || | || | |||||||||||||||||| ||||| || | || Sbjct 654367 ACACCAAGGCCCATATCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 654308 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 || ||||||||||| ||| ||||| || || ||||||||| Sbjct 654307 ACATAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATG 654266 >seq1960 Length=1325267 Score = 129 bits (142), Expect = 7e-25 Identities = 141/185 (76%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 145727 CGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGG 145786 |||| | ||||| || |||| |||| |||| ||| || | |||| ||| ||||||| Sbjct 896298 CGTGTACAAAGTCACCTGGCTTCAGGCG-GTGATGTGTGCAATCATGAAGG--AGCAGGG 896354 Query 145787 AGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCT 145846 | || |||| |||||||||||||| | ||| |||||||| | || | ||||||||||| Sbjct 896355 AATATTTGGCAATGTTGAAGGGCACACTCAGGCCCATGTCTGCTGATCTCTGGTACAGCT 896414 Query 145847 GGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGG 145906 ||||||| ||||| | | | |||| ||| |||||| ||| || ||| | ||||||| Sbjct 896415 GGCAGGACAGCTCACTGTTCACCACACAGAGCTGGCAAAGGGCATGACAGAGAGGCAGGG 896474 Query 145907 CCATG 145911 ||||| Sbjct 896475 CCATG 896479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590058433859600