Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1708 262 5e-65 seq413 176 5e-39 seq2215 154 2e-32 seq1801 102 1e-16 >seq1708 Length=2008767 Score = 262 bits (290), Expect = 5e-65 Identities = 261/338 (77%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| |||||||||||||| | | | | ||| | || |||||||||| |||||| Sbjct 1118154 AGCAGGGTTTCGATGTCGGGCTCGATGTCGATCGTCGGAAAGTGGTGGCTGTATCTGCGC 1118213 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || |||||| ||||| | |||||||||||||||||||| | |||||||||| Sbjct 1118214 ACAGGAACGCCGTCCCGGCCCACAAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGG 1118273 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || ||||||||| |||| || ||| ||| ||| ||||| | | || ||| ||| Sbjct 1118274 CATACCGGAGACCAGATGATGAACTTGGGATCGGTCATGAGCGCGGTGGTGGTGTCACTA 1118333 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||| ||||| | ||||||||||||||| || ||| |||| ||||| ||| Sbjct 1118334 GGCGCGGGCAGAGCCTCCTTCAAGAAGGCGAAGAGCGGGTGCGCCTTTGCGCCGTTCACC 1118393 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | ||||| || ||||| ||| || || ||||||| ||| Sbjct 1118394 TCGCACTTCTCGAAGAGGGTGAAGTTGGGTTCGAACCCGCCGCCGGGTCGGACGTACTTG 1118453 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| || |||||| | || | |||||||||||| Sbjct 1118454 AGAGAATTCAGGATCTCTTCGTTTTTGGCGTTTTCCTG 1118491 Score = 205 bits (226), Expect = 1e-47 Identities = 172/211 (82%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 1118694 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGGCCGAGGC 1118753 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||| | Sbjct 1118754 GCCGCTGCAGCTCGTTCATCTGAGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1118813 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 1118814 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 1118873 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || ||||||| |||||| || Sbjct 1118874 CCAGCGGGCGCGCGGAGAAGGGGTACACGGA 1118904 >seq413 Length=2965004 Score = 176 bits (194), Expect = 5e-39 Identities = 246/348 (71%), Gaps = 13/348 (4%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| |||| ||| ||||| | | | | |||| | ||||| ||||| |||||||| Sbjct 367464 AGCAGGGTTTCGAGGTCCGGCTCGATGTCGACGGTCGGAAAGCGGCGGCTGGACCTGCGC 367523 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || | || ||| ||||||| | || |||||| || || ||| ||||| | |||| Sbjct 367524 ACAGGGGCGCGGTCCCGGCCCACCAGGGACCTCTCGACGTGCCCGGCAACGTCCTGGCGG 367583 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||| | ||| ||| || ||||| || |||| || Sbjct 367584 CACACCGGAGACCAGGTAATGAACCTGGGATCGGTCGGGAGCGCCACGGTGACGTCACTG 367643 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||| | ||||| |||||| | ||| || || || ||| Sbjct 367644 GGCGCGGGCAG-------------ACGGCGAGGAGCGGGGGCGCCTGGGCGCCATTCACC 367690 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | ||||| |||||||| | | | ||||| || ||| || | Sbjct 367691 GCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCTGCTGCCAGGTCGCACGGACTGC 367750 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAAC 83404 ||||| || |||||| | || ||| || ||||| ||| || || Sbjct 367751 AGGGACTCCAGGATCTCTTCGTTGCTGGCCTTCTCCTGATGATCGCAC 367798 >seq2215 Length=832077 Score = 154 bits (170), Expect = 2e-32 Identities = 184/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 83324 GGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGG 83383 |||||||| |||| ||| | |||| || ||| |||||| || ||||| |||| | Sbjct 522160 GGCTCGAACCCGTCGCCAAGGCGGATGTACTTGAGGGAATTCACGATCTATTTGTTCTTG 522101 Query 83384 GCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCT 83443 | || ||||| || ||||||||||| |||||||| |||||||| || || ||||| | Sbjct 522100 GGATTCTCCTGATGTCCGAACTGGTTGCACGGGAAGCCAAGCACCACTAGGCCCCGGGGC 522041 Query 83444 CCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGG 83503 | | ||||||||||||||| ||| |||| ||||| || ||||||| | |||||||| Sbjct 522040 CAGAAGCGCCGCTGCAGCTCATTC-TCTGGGTGTA-GCCTGGACCGTTGTGCCTCAGAGC 521983 Query 83504 GACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCT 83563 || | || ||||| | ||||| | | |||||| | | ||| | ||||||||| || Sbjct 521982 TACACCACATTCTCAAAGAGCAGCATCTTGCCCCGCAGGGAGCTCAGGCTCACAGGCTCC 521923 Query 83564 CCTCCGG 83570 || |||| Sbjct 521922 CCGCCGG 521916 >seq1801 Length=1694280 Score = 102 bits (112), Expect = 1e-16 Identities = 202/290 (70%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 304602 GCAGCTTCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 304660 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| | | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 304661 TCGTGCATCTCTTCCCCGAGCTCTTCACCCATGAGAACCTGCGCAAGCAGTACAACTGCA 304720 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 ||||||| | |||||| |||| || |||||| ||| | | |||| || ||| Sbjct 304721 GCGGCTCCCTAGGCAAGAAGCAG-CTAGACCCGTCCCGCAT---CAAGCTCATTCGCCAC 304776 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| |||| ||| || || ||||| |||| |||| || Sbjct 304777 TACGTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGCGTCTGGACGCTGGAGTTTGTG 304836 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 304837 GGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 304884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608777851199600