Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1767 84.2 2e-11 seq1424 82.4 6e-11 >seq1767 Length=1785757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| | |||||| |||||||| | ||||||||||||| Sbjct 523922 GATAAGGAAGGAATTCCTCCTGATCAGCGAAGACTGATCTTTGCTGACAAACAATTGGAA 523863 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| || || | || ||||| ||||||||||| ||||||||||| | ||||| Sbjct 523862 GATGGATGTACCTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 523804 >seq1424 Length=2309046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 25024 ATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA 25083 |||| || ||||||||||| ||| | || || |||| ||||| ||||| ||| ||| Sbjct 23676 ATAG-GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAG 23618 Query 25084 CGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGC 25143 ||||||| || || | | || | ||| || || ||||| ||||| | | Sbjct 23617 TGGAACCCAGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATCC 23558 Query 25144 CCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGG 25203 | ||| || || || || |||||||| ||||| || |||||||| | ||| | Sbjct 23557 CTCCAGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTT 23498 Query 25204 CCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 | |||||||| ||||| ||||| || || || || |||| Sbjct 23497 CTGATTACAACATTCAGAAGGAGTCGACCCTGCATCTGGT 23458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410784333600860