Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1960 96.9 2e-15 >seq1960 Length=1325267 Score = 96.9 bits (106), Expect = 2e-15 Identities = 221/326 (68%), Gaps = 5/326 (2%) Strand=Plus/Plus Query 97007 TTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACAT 97066 ||||||||||||| || || ||||||| | | || ||| ||||||||| | Sbjct 896217 TTGGGAAAGGCCTTGGTTCTCAATGAAGCTGCATTTTCAGCAGTTCAGTGTGATTCAGAA 896276 Query 97067 AAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGG 97126 ||||||| || | | |||| ||| | ||| || || || | | | |||| || | Sbjct 896277 AAATGTGTGCCTATGGCAAAGCGTGTACAAAGTCACCTGG-CTTCAGGCGGTGATGTGTG 896335 Query 97127 CGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATAT 97186 | ||||| ||| | || ||||| | |||||||| || ||||| | || ||||| | Sbjct 896336 CAATCAT-GAAG-GAGCAGGGAATATTTGGCAATGTTGAAGGGCACACTCAGGCCCATGT 896393 Query 97187 CAGCTGATCTTTGATATAACTGACAGGAAAGCTTTC-CATCACACACATAAAACTGACTC 97245 | |||||||| || || | ||| ||||| |||| | |||| |||| | | ||| | Sbjct 896394 CTGCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCAC-CACACAGAGCTGGCAA 896452 Query 97246 AATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATC 97305 | |||||||| | |||| ||||| |||| |||| |||||||| ||||| Sbjct 896453 AGGGCATGACAGAGAGGCAGGGCCATGCGAGGAAAATCTTTTGGATTCCAAGAACACAGG 896512 Query 97306 AACATTCTTCTATCGGTTGGGTTTGT 97331 | |||||||| || | ||||| || Sbjct 896513 ATGATTCTTCTGTCATTGGGGTTGGT 896538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773476189300