Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1704 104 4e-17 >seq1704 Length=2019467 Score = 104 bits (114), Expect = 4e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| |||||||| ||||| || ||||||||| | || ||||| Sbjct 1835471 GCATTTTTTGGAGCCCAGCTGAATTCTTTCATCCACGTGATTATGTACTCATACTATGGC 1835530 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| ||||| ||||||||||| || || || | Sbjct 1835531 TTAACTGCGTTTGG-CCCATGGATTCAGAAA-TATCTTTGGTGGAAACGATACCTGACCA 1835588 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 1835589 TGTTGCAGCTGGT 1835601 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| |||||| | | | || || || || || |||| |||||| |||||||| || Sbjct 1837819 GGTTCAGTTCTTTGTGACCATTGGGCACACAGCACTGTCTCTTTACACTGATTGCCCCTT 1837878 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| |||| | || || |||||||| || ||| Sbjct 1837879 CCCAAAATGGATGCACTGGGCTCTAATTGTCTACGCAATCAGCTTCATATTTCTCTTTCT 1837938 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 1837939 TAACTTCTATGTTCGGACATACAA 1837962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923168065499600