Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq1704 104 4e-17
>seq1704
Length=2019467
Score = 104 bits (114), Expect = 4e-17
Identities = 105/133 (79%), Gaps = 4/133 (3%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|||||||||||||| ||||| |||||||| ||||| || ||||||||| | || |||||
Sbjct 1835471 GCATTTTTTGGAGCCCAGCTGAATTCTTTCATCCACGTGATTATGTACTCATACTATGGC 1835530
Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174
| | || | ||| || ||| |||||||| ||||| ||||||||||| || || || |
Sbjct 1835531 TTAACTGCGTTTGG-CCCATGGATTCAGAAA-TATCTTTGGTGGAAACGATACCTGACCA 1835588
Query 52175 TAATGCAGTTGGT 52187
| ||||| ||||
Sbjct 1835589 TGTTGCAGCTGGT 1835601
Score = 89.7 bits (98), Expect = 9e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| |||||| | | | || || || || || |||| |||||| |||||||| ||
Sbjct 1837819 GGTTCAGTTCTTTGTGACCATTGGGCACACAGCACTGTCTCTTTACACTGATTGCCCCTT 1837878
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
||||||||||| || ||| | | ||| |||| | || || |||||||| || |||
Sbjct 1837879 CCCAAAATGGATGCACTGGGCTCTAATTGTCTACGCAATCAGCTTCATATTTCTCTTTCT 1837938
Query 52305 TAACTTCTATTTTAGAACATACAA 52328
|||||||||| || | ||||||||
Sbjct 1837939 TAACTTCTATGTTCGGACATACAA 1837962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923168065499600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |