Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1767 89.7 8e-13 seq2080 84.2 3e-11 >seq1767 Length=1785757 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 523789 CCACCATAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 523847 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || |||||||| ||||||| |||| |||| ||||||| ||||| Sbjct 523848 CAAGGTACATCCATCTTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGG 523907 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 523908 AATTCCTTCCTTATCCTG 523925 >seq2080 Length=3818131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| || || | ||| | ||| || || ||| || || | || || || ||||| Sbjct 1111791 AAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTCGTAGTCAGATAGAGTAT 1111733 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | ||| || |||||||| |||| ||||||||||| ||||||||||||| Sbjct 1111732 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTT 1111673 Query 146178 CTTTATCTTG 146187 ||||||| || Sbjct 1111672 CTTTATCCTG 1111663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743503257740800