Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2268 1651 0.0 seq1837 140 2e-28 >seq2268 Length=6398370 Score = 1651 bits (1830), Expect = 0.0 Identities = 1356/1650 (82%), Gaps = 40/1650 (2%) Strand=Plus/Minus Query 107135 AAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTA-C 107193 |||| || |||||||| ||||||| |||||| |||||| |||||| || || ||| | Sbjct 2181308 AAGGTTCCTAGGCAGGTCTTGACT-AGGATAGATGTCTAGAGAAGAAATACATTTTTTGC 2181250 Query 107194 CATCACTCTGGAGTTGAACTTGATGTTCT-------------GGATTAGTTTGTAATTAA 107240 ||| || ||||||||||||||| |||| |||||| ||||||| | | Sbjct 2181249 CATTGCTTTGGAGTTGAACTTGACATTCTTGGGACACATTCAGGATTAATTTGTAACTGA 2181190 Query 107241 AGGCATTTTGTTCTGTCCAAGGATCTC---CTCCTCCACCTTGCCTGTGCCCAAACTCTC 107297 ||| ||||||||||| ||||||| || ||||||| ||| ||||||| |||||||| Sbjct 2181189 AGGATTTTTGTTCTGTTCAAGGATTTCATCCTCCTCCTCCTCCCCTGTGCTCAAACTCTA 2181130 Query 107298 CTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCAT 107357 | |||||| ||| |||||||||| | ||||||||||||| || || | || | Sbjct 2181129 CCGATCTCTCATTTCATGAAGATGATTTGGTGGAAGAAGAAACTCTGTCACCAGTATTAC 2181070 Query 107358 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGG 107417 |||||||||||||||| |||| ||||||||||| ||||| |||||||||||| ||||| Sbjct 2181069 CTGTGGGCCCTGGGCTTCTATTTGCTGCTGGCCATTGTTGGTCTGAGACTTTCTCTCAGA 2181010 Query 107418 TTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGT 107477 | || ||||| | |||| | | ||||||||||||| | |||| || || |||||||| Sbjct 2181009 CTGAAGTGTGACTTTGATTTCCTCGATCTGGAGTCCAAGCACTTTCAAAGCAAGCACTGT 2180950 Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537 |||||||| ||||| || ||||||| |||||||||||||||| |||||||||||||| Sbjct 2180949 AGGGACATCTTGTATAAGTCCCTGAAGTTGCCAGCAAAGAGATCTATCAACTGTTCTGGA 2180890 Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597 |||| | ||||||||||||||||||| | |||| ||||| ||||| ||||| || ||| Sbjct 2180889 ATCATACAAGGGGACCAGGAAGCAGTGACCAAGGCTCTCCTGGACAAGCTGGAGGTCAAG 2180830 Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657 || |||||| |||| ||| | || | ||||||||||| ||||||||||||| || | Sbjct 2180829 AAGAAGCGGGAGCCTTACACAGACATTGACTACCTCAACATGACCAGAGACTGTGTGCAC 2180770 Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCC 107717 || |||||| |||||||||||||||||| | |||| || ||||||||| |||||||||| Sbjct 2180769 TTTAAGGCCAAAAGGAAGTTCATACAGTACACACTCAGCAAAGAAGAGTTAGACTTCCCT 2180710 Query 107718 ATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCC 107777 ||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| | ||| Sbjct 2180709 ATTGCGTACTCTATGGTGGTCCATGAGAAAATTGAAAACTTTGAAAGGCTGCTAAGGGCC 2180650 Query 107778 GTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTC 107837 ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||| Sbjct 2180649 GTGTATGCCCCTCAGAACATATATTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTTC 2180590 Query 107838 AAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 107897 |||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||| Sbjct 2180589 AAAGAGGCAATCAAGGCAATTATTTCATGCTTCCAAAATGTCTTCATGGCCAGTAAGTTG 2180530 Query 107898 GTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC 107957 || | |||||||||||||||||||||||| ||||| ||||| || ||||||||||||||| Sbjct 2180529 GTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGATCTCAACTGTATGGAAGAC 2180470 Query 107958 TTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 |||||||||||||||||||||||||| ||| | |||||||| || || |||||||| || Sbjct 2180469 TTGCTCCAGAGCTCAGTGCCATGGAAATACGTCCTGAATACCTGTGGAACAGACTTTCCT 2180410 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATG 108077 || ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 2180409 ATTAAGACCAATGCTGAGATAGTCCTGGCCCTCAAGATGTTGAAGGGGAAGAACAGTATG 2180350 Query 108078 GAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACA 108137 ||||| ||| ||||| |||||| |||||| |||||||| ||| | ||||||||||||| Sbjct 2180349 GAGTCAGAGATACCTACTGAGTTGAAAAAATCTCGCTGGAGATATCACTATGAGGTGACA 2180290 Query 108138 GACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTC 108197 || || | | ||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 2180289 GATACCATACGCATGACCAGCAAGATGAAGGACCCTCCTCCTGATAATTTACCTATATTC 2180230 Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257 || |||||||||||| ||||||| ||||||| ||||||||| || ||| |||| ||||| Sbjct 2180229 ACTGGGAATGCCTATATTGTGGCTTCTCGAGGCTTTGTCCAGCAGGTCCTAGAGAACCCC 2180170 Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317 ||||||||| ||||| | |||||| |||||||| ||||||||||| |||||||| ||| Sbjct 2180169 AAATCCCAACGACTGATCAAATGGGCAAAAGACACTTATAGCCCCGATGAACACCTTTGG 2180110 Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 ||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||| Sbjct 2180109 GCCACCCTTCAGCGTGCACCCTGGATGCCTGGCTCTGTTCCTTACCACCCCAAATATCAC 2180050 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 ||||||||||| ||||||| |||||||| ||||||||| || ||| || ||||||||| Sbjct 2180049 TTCTCAGACATGGCTGCCATTGCCAGGCTGGTCAAGTGGGAGGGCCATGAAGGAGATGTC 2179990 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 ||||||||||| |||||||| || ||||| || ||||| | | |||| ||||| ||||| Sbjct 2179989 AGCATGGGGGCACCTTATGCCCCTTGCTCCGGGATCCACCAGCGGGCTATCTGTATTTAT 2179930 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||||||||| | |||||||| ||||||||||| || ||||| |||||||||||| Sbjct 2179929 GGGGCTGGGGACCTGCATTGGATTCTTCAGAACCATCATCTGTTGGCCAACAAGTTTGAC 2179870 Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATC 108617 || | ||| |||||||| || || |||||||||||||| ||| ||||| ||||||||||| Sbjct 2179869 CCTAAGGTAGATGATAATGTTCTTCAGTGCTTAGAAGAATACTTACGTTATAAGGCCATC 2179810 Query 108618 TATGGGACTGAACTTTGAGCTGCA------------------CTGTGGGCCAGGGAC-TG 108658 || ||||||||||| |||| | || ||| ||| |||| || | Sbjct 2179809 TACGGGACTGAACTCTGAGATACATTGTGAGGGAATTGCTACCTGCGGGGCAGGAACACG 2179750 Query 108659 TGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATC 108718 | | ||||||||||| |||| |||| || | || ||||||| || |||| | |||| Sbjct 2179749 TACAAACATGCCCAGAGCGTGCTGGGACAGCGTAGGGTGGGAGATCAGGG--TTCAAATC 2179692 Query 108719 CATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 | ||||| ||| | ||| | |||||||| Sbjct 2179691 CGTGGCA-CCCACTGGGGGAAGGGGCTGCT 2179663 >seq1837 Length=1607474 Score = 140 bits (154), Expect = 2e-28 Identities = 573/892 (64%), Gaps = 41/892 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||| |||||| ||| || || || || || || || ||||| ||| | || Sbjct 103426 CCCCTTAGTAAGGAAGAGGCAGAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAA 103485 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 103486 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 103545 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | ||||| | | |||| ||||| Sbjct 103546 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCGGTGATTGGCATTGCATCCTGT 103605 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| ||||| ||||| || ||| | Sbjct 103606 TTCAATAATGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTATGCATCATGGAGTCGG 103665 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||||||| | ||| | || |||| | ||||| | ||||||| Sbjct 103666 GTCCAGGCCGACCTCAACTGTATGCAGGACCT-CTACAGAA-TGAGTGCAAACTGGAAGT 103723 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 103724 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 103783 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||||| || | ||| | |||| | || ||||| | | ||||| | Sbjct 103784 AACTCAAGTCATTAATGGGAGAAAACAACCTAGAAACTGAGAAAATGCCA---TCCAATA 103840 Query 108106 aaa---aTCGCTGGAAA--------TACCGCT----ATG---AGGTGACAGACACACTGT 108147 ||| | | |||||| ||| | | ||| || ||||| ||||| | Sbjct 103841 AAATAGAAAGGTGGAAAAAGCATTATACAGTTGTTAATGGAAAGCTGACAAACACAGGG- 103899 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 || ||| ||| | |||||| | ||| | ||| |||| |||| | || Sbjct 103900 -----ACTGACAAAATGCA---CCCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGTG 103948 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA-AATCCCAA 108266 ||||||| |||| | | | | ||| | | || |||| || | ||||| || Sbjct 103949 CCTATTTCGTGGTCAGTAGGAATTATGTGGAGTACGTACTAGAGAATGAAAGAATCCAAA 104008 Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326 || | | || |||| |||||||| || ||||| || || | ||||||||||| || Sbjct 104009 AGTTTA-TGGAGTGGGCAAAAGACACGTACAGCCCAGATGAGTATCTCTGGGCCACTATT 104067 Query 108327 CAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGA 108385 ||| | | ||| || | | || ||||| | || || |||||| |||| || || Sbjct 104068 CAGAG-GATCCCTGAAGTCCCAGGCTCACTGCCCTTAAACTATAAGTATGACATGTCCGA 104126 Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 |||| ||| ||||| ||| | ||||||||||||||| || || ||||| || ||| Sbjct 104127 CATGCTTGCAATCGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGCGATGTTTCCAAGGG 104186 Query 108446 GGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGG 108505 || || || |||||||| ||| ||||| | || | || ||| || || || Sbjct 104187 CGCCCCCTACCCACCCTGCAATGGTGTCCATGTACGCTCCGTGTGTGTTTTTGGAGCAGG 104246 Query 108506 GGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| || ||||||| || || || || ||| | || || || ||||||||| Sbjct 104247 TGACTTGAACTGGATACTGCACAAGCACCACTTATTTGCCAATAAGTTTGAC 104298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348258231130260