Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1841 120 3e-22 seq1424 107 2e-18 seq2363 91.5 1e-13 seq54 86.0 6e-12 >seq1841 Length=1603521 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| ||||| || ||||| || || || || Sbjct 624151 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATTGTT 624210 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| |||||||||||||| || || Sbjct 624211 CCCAGGTTTTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTA 624270 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || |||||| ||| ||||| ||||| || Sbjct 624271 CCTGTCTCGGTCTGAGACTCAATGATGGC 624299 >seq1424 Length=2309046 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||||| Sbjct 23210 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 23151 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| |||||||| | || || |||||| Sbjct 23150 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAG 23091 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||||||| |||| || ||| | || || ||| Sbjct 23090 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGACTACAAC 23031 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| ||||| || |||||||| || | ||||||||||||| Sbjct 23030 ATTCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGCGGTA 22982 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 23438 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCAAGT 23379 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| ||||||||| | || || |||||| Sbjct 23378 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 23319 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||||||| |||| || ||| | ||||| ||| Sbjct 23318 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 23259 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || |||||||| || | ||||||||||||| Sbjct 23258 ATTCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGCGGTA 23210 >seq2363 Length=646923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| | || || || || | Sbjct 187679 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 187738 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || |||||| Sbjct 187739 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAG 187798 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || ||| |||||||| || || ||| || ||| Sbjct 187799 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 187858 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || || || ||||| ||| | |||| || ||| Sbjct 187859 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTTCGCTTGAGAGGAGGT 187906 >seq54 Length=460634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC-GTC 31251 ||||| || || || ||||| ||||| ||||| || ||||| || | || | || || Sbjct 180320 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTCAAGGTCCAGCCAGT- 180378 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| |||||| | ||| |||||||| ||| | || || ||||| Sbjct 180379 -GACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCA 180437 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||||| || || || | ||||||||| ||| ||| | || ||| | || |||| Sbjct 180438 GCAGCGACTGATCTTTGTGGGCAAACAGCTGG-AGAATGGCTGCACTCTCTCAGACTATA 180496 Query 31371 ACATTCAAAAAGAATCGACTCT 31392 | ||||||||||| || || || Sbjct 180497 ATATTCAAAAAGAGTCCACCCT 180518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752525520800