Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1841 120 3e-22
seq1424 107 2e-18
seq2363 91.5 1e-13
seq54 86.0 6e-12
>seq1841
Length=1603521
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || |||||||| ||||| ||||| || ||||| || || || ||
Sbjct 624151 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATTGTT 624210
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| || ||||| || ||||| |||||||||||||| || ||
Sbjct 624211 CCCAGGTTTTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTA 624270
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| |||||| ||| ||||| ||||| ||
Sbjct 624271 CCTGTCTCGGTCTGAGACTCAATGATGGC 624299
>seq1424
Length=2309046
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || |||||| | || || |||||
Sbjct 23210 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 23151
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||| |||||||| | || || ||||||
Sbjct 23150 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAG 23091
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || || ||||||||| |||| || ||| | || || |||
Sbjct 23090 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGACTACAAC 23031
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| ||||| ||||| || |||||||| || | |||||||||||||
Sbjct 23030 ATTCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGCGGTA 22982
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || |||||| | || || || ||
Sbjct 23438 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCAAGT 23379
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||| ||||||||| | || || ||||||
Sbjct 23378 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 23319
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || || ||||||||| |||| || ||| | ||||| |||
Sbjct 23318 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 23259
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || ||||| || |||||||| || | |||||||||||||
Sbjct 23258 ATTCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGCGGTA 23210
>seq2363
Length=646923
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| || || || |||||| | || || || || |
Sbjct 187679 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 187738
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || |||||||||||| | || || ||||||
Sbjct 187739 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAG 187798
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || || || || ||| |||||||| || || ||| || |||
Sbjct 187799 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 187858
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || || || || || || ||||| ||| | |||| || |||
Sbjct 187859 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTTCGCTTGAGAGGAGGT 187906
>seq54
Length=460634
Score = 86.0 bits (94), Expect = 6e-12
Identities = 143/202 (71%), Gaps = 5/202 (2%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC-GTC 31251
||||| || || || ||||| ||||| ||||| || ||||| || | || | || ||
Sbjct 180320 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTCAAGGTCCAGCCAGT- 180378
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||||| |||||| | ||| |||||||| ||| | || || |||||
Sbjct 180379 -GACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCA 180437
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||||| || || || | ||||||||| ||| ||| | || ||| | || ||||
Sbjct 180438 GCAGCGACTGATCTTTGTGGGCAAACAGCTGG-AGAATGGCTGCACTCTCTCAGACTATA 180496
Query 31371 ACATTCAAAAAGAATCGACTCT 31392
| ||||||||||| || || ||
Sbjct 180497 ATATTCAAAAAGAGTCCACCCT 180518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445752525520800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |