Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1989 136 3e-27 seq1960 95.1 1e-14 >seq1989 Length=1255173 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| | |||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 654429 TCAGGTCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 654370 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || |||||||| || || ||||||||||||||||||||||||||||| || Sbjct 654369 GCACACCAAGGCCCATATCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCA 654310 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 |||| || ||||| || | | || || ||||| || ||||| Sbjct 654309 CCACATAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCAT 654267 >seq1960 Length=1325267 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 20963 CAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAG 21022 ||| | ||| |||||||| || || |||||| |||| ||| || |||| | | || Sbjct 896293 CAAAGCGTGTACAAAGTCACCTGGCTTCAGGCG-GTGATGTGTGCAATCATGAAGG--AG 896349 Query 21023 GAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTA 21082 |||| || |||| ||||| || || || | ||||||||||| || || |||||||| Sbjct 896350 CAGGGAATATTTGGCAATGTTGAAGGGCACACTCAGGCCCATGTCTGCTGATCTCTGGTA 896409 Query 21083 CAGCTGGCAGGACAGCTC 21100 |||||||||||||||||| Sbjct 896410 CAGCTGGCAGGACAGCTC 896427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427763018335200