Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2363 104 2e-17 seq1424 95.1 1e-14 seq1767 82.4 8e-11 >seq2363 Length=646923 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| |||||| ||||| || || Sbjct 187875 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCG 187816 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || |||||||| ||||| ||| || || Sbjct 187815 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 187756 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| ||||||| || Sbjct 187755 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 187696 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 187695 TTCACGAAGATCTGCAT 187679 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 139560 AGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCT 139619 |||| | || ||||| || || ||||| || ||| || |||| |||||| |||| Sbjct 187322 AGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCT 187263 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 | || || ||| ||||||| | ||||| || || || ||||| || ||||| ||| | Sbjct 187262 GCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCT 187203 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | || | | || | |||||| ||||||||||||| | ||| | ||||| |||| Sbjct 187202 TGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGG 187143 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 ||| || || ||||| || ||||| Sbjct 187142 TCAGGGTCTTCACGAAGATCTGCAT 187118 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| |||||| ||||| || || Sbjct 186639 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCG 186580 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 186579 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 186520 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| ||||||| || Sbjct 186519 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 186460 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 186459 TTCACGAAGATCTGCAT 186443 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCA 139630 ||||| || || ||||| || ||| || |||| |||||| ||||| || || ||| Sbjct 186864 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCA 186805 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 ||||||| | ||||| || || || ||||| || ||||| ||| || || | Sbjct 186804 AAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 186745 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | || | |||||| ||||||||||||| | ||| | ||||| ||||||| || || Sbjct 186744 TTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTC 186685 Query 139751 ACGAATATTTGCAT 139764 ||||| || ||||| Sbjct 186684 ACGAAGATCTGCAT 186671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| |||||| ||||| || || Sbjct 187086 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCG 187027 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 187026 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 186967 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| ||||||| || Sbjct 186966 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 186907 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 186906 TTCACGAAGATCTGCAT 186890 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || ||| || |||| |||||| ||||| || || Sbjct 187647 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCG 187588 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 187587 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 187528 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| ||||||| || Sbjct 187527 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 187468 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 187467 TTCACGAAGATCTGCAT 187451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| |||||| ||||| || || Sbjct 186411 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCG 186352 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 186351 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 186292 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| | |||| || Sbjct 186291 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCGCGTCAGGGTC 186232 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 186231 TTCACGAAGATCTGCAT 186215 >seq1424 Length=2309046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| ||||| | |||| ||||| ||||| || || Sbjct 23470 GTCGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 23529 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| |||||||| || || ||| || ||| Sbjct 23530 GCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTT 23589 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||| ||||| || | ||| | ||||||||||||| || Sbjct 23590 ACATTCTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 23649 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 23650 TTCACGAAGATTTGCAT 23666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| |||||||| ||||| | |||| || || |||||||| || Sbjct 22786 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCT 22845 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| |||||||| || || ||| || || Sbjct 22846 GCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 22905 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||| ||||| || | ||| | ||||||||||||| || Sbjct 22906 ACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 22965 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 22966 TTCACGAAAATCTGCATA 22983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| ||||| | |||| || || |||||||| || Sbjct 23242 GTCGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCT 23301 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 23302 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 23361 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||||||||| | ||| | ||||||||||||| || Sbjct 23362 ACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 23421 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 23422 TTCACGAAGATCTGCATA 23439 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| |||||||| || || | |||| || || |||||||| || Sbjct 23014 GTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCT 23073 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| || ||||| || || ||| || || Sbjct 23074 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGCCTTC 23133 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||| ||||| || | ||| | ||||||||||||| || Sbjct 23134 ACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 23193 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 23194 TTCACGAAGATCTGCATA 23211 >seq1767 Length=1785757 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || || || | || | ||||| | || Sbjct 523813 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACATCCA-TCTTCCAATTG 523871 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| ||||| ||||||| | | ||||||| ||||| || ||||| || || ||| || Sbjct 523872 TTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 523931 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| | | ||| || ||||||| || | ||||| || || Sbjct 523932 GGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGTCTTCCCTGT 523991 Query 139741 CAA-CGTTTTTACGAATAT 139758 || ||||| ||||| || Sbjct 523992 TAAGGGTTTTCACGAAAAT 524010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048560008000