Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1841 134 2e-26
seq654 129 8e-25
>seq1841
Length=1603521
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| |
Sbjct 610003 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 610062
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| ||||||||||| | ||| ||||||||||| || || |||||||| || | | ||||
Sbjct 610063 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 610122
Query 79180 CTATTTCTAAGACCGTA 79196
|||||||| | ||| ||
Sbjct 610123 CTATTTCTTATACCATA 610139
Score = 111 bits (122), Expect = 2e-19
Identities = 138/189 (73%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358
||| |||||||| || || | || | ||| || ||||| || || || || ||||| ||
Sbjct 620898 GTAGGTTTCATATGGGCCATGCTCCTTGGCCAAATCACAGCTGGCTTCCAAGGCTCCATA 620957
Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418
|||||||||||| || || | |||||| | || || ||| | || ||||| |||||
Sbjct 620958 ATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATA 621017
Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478
| | |||||||| |||||||| | ||||| || ||||| ||||| || | ||| |
Sbjct 621018 CCTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGCG 621077
Query 79479 CTTATTAGA 79487
||||| ||
Sbjct 621078 TTTATTTGA 621086
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || || || |||| | ||
Sbjct 625537 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCGCGCTGT 625596
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| ||
Sbjct 625597 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 625656
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 625657 TCCAGGTAAATAGC 625670
>seq654
Length=93227
Score = 129 bits (142), Expect = 8e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || |
Sbjct 54046 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCT 53987
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 53986 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 53927
Query 50102 CAACAA 50107
| ||||
Sbjct 53926 CGACAA 53921
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 53115 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 53056
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || ||||||||||| | || || || ||||| ||||||
Sbjct 53055 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 53010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718246443883600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |