Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1841 138 2e-27 seq654 123 3e-23 >seq1841 Length=1603521 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 610003 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 610062 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | || | Sbjct 610063 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 610122 Query 71263 CTATTTCTAAGACCAT 71278 |||||||| | ||||| Sbjct 610123 CTATTTCTTATACCAT 610138 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || ||||| || | | | ||| | ||||| || || || || ||||||||| Sbjct 620899 TAGGTTTCATATGGGCCATGCTCCTTGGCCAAATCACAGCTGGCTTCCAAGGCTCCATAA 620958 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| || || | |||||| | || || || || || ||||| ||||| Sbjct 620959 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 621018 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | |||||||| |||||||| | ||||| || ||||| ||||| || | || | Sbjct 621019 CTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGCGT 621078 Query 71563 TTATTAGA 71570 ||||| || Sbjct 621079 TTATTTGA 621086 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 625537 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCGCGCTGT 625596 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| || Sbjct 625597 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 625656 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 625657 TCCAGGTAAATAGC 625670 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| |||||||| ||||| | || || || || | || || || |||| Sbjct 636388 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAACCCTTGCTGCCAGAA 636447 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 636448 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 636507 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 636508 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 636553 >seq654 Length=93227 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 54046 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCT 53987 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 53986 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 53927 Query 42207 C 42207 | Sbjct 53926 C 53926 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 53115 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 53056 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || ||||||||||| | ||| || || | ||| |||||| Sbjct 53055 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 53010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671118310792400