Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1841 138 2e-27
seq654 123 3e-23
>seq1841
Length=1603521
Score = 138 bits (152), Expect = 2e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 610003 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 610062
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
|||||||||||||| | ||| ||||||||||| ||||| |||||||| || | | || |
Sbjct 610063 GACTCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAA 610122
Query 71263 CTATTTCTAAGACCAT 71278
|||||||| | |||||
Sbjct 610123 CTATTTCTTATACCAT 610138
Score = 96.9 bits (106), Expect = 5e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442
|| || || ||||| || | | | ||| | ||||| || || || || |||||||||
Sbjct 620899 TAGGTTTCATATGGGCCATGCTCCTTGGCCAAATCACAGCTGGCTTCCAAGGCTCCATAA 620958
Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502
||||||||||| || || | |||||| | || || || || || ||||| |||||
Sbjct 620959 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 621018
Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562
| | |||||||| |||||||| | ||||| || ||||| ||||| || | || |
Sbjct 621019 CTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGCGT 621078
Query 71563 TTATTAGA 71570
||||| ||
Sbjct 621079 TTATTTGA 621086
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| |||||||| ||||||||||| || | || || || |||| | ||
Sbjct 625537 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCGCGCTGT 625596
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| || ||| | | ||||| ||||||| ||
Sbjct 625597 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 625656
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 625657 TCCAGGTAAATAGC 625670
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | ||| |||||||| ||||| | || || || || | || || || ||||
Sbjct 636388 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAACCCTTGCTGCCAGAA 636447
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
||||||| || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 636448 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 636507
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 636508 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 636553
>seq654
Length=93227
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 54046 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCT 53987
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 53986 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 53927
Query 42207 C 42207
|
Sbjct 53926 C 53926
Score = 93.3 bits (102), Expect = 6e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| || || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 53115 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 53056
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| || || ||||||||||| | ||| || || | ||| ||||||
Sbjct 53055 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 53010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671118310792400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |