Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1669 114 1e-20 >seq1669 Length=5184857 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 4063060 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 4063001 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 4063000 TTAACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4062941 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 4062940 CCACCACCCTTTCCCC 4062925 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||| ||||||||||| |||||||||||| Sbjct 4069507 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTCTTTCCTTCTAAAGAAATATTTTCC 4069448 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 4069447 ATAAAATCAAAGGGATTTT 4069429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| |||| |||||||| || | Sbjct 4068652 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAATTCATTCCAATGAGG 4068593 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| |||||||||||||| Sbjct 4068592 CCAACTGGCAAGGCTTCTGTTAAAAA 4068567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969321030980