Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1424 158 3e-33 seq1767 140 7e-28 seq171 140 7e-28 seq2080 129 1e-24 seq1669 120 7e-22 seq2069 118 2e-21 seq54 118 2e-21 seq1958 114 3e-20 seq1 109 1e-18 seq2050 95.1 3e-14 seq2480 93.3 1e-13 seq2475 91.5 3e-13 seq1391 91.5 3e-13 seq1704 89.7 1e-12 seq557 89.7 1e-12 >seq1424 Length=2309046 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || ||||||||||| || |||||| Sbjct 22981 ATACCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCA 23040 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || || ||||| || ||||| || |||||||| || |||||| Sbjct 23041 GAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 23100 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || ||||| || | ||| || || ||||| Sbjct 23101 GGAATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCC 23160 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || || || || || || || |||||||| Sbjct 23161 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23210 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||||||||| || || ||||| ||||| | || || Sbjct 22771 AGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCC 22830 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| || ||||| || |||||||| || || ||||| || ||||| |||||| Sbjct 22831 TCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 22890 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||| || || ||||| || || || || || ||| Sbjct 22891 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTC 22950 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 22951 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 22982 >seq1767 Length=1785757 Score = 140 bits (154), Expect = 7e-28 Identities = 165/222 (74%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || ||||| || |||||||| | || | || ||||| Sbjct 523807 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACATCCATCTTCC 523866 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | |||||| ||||||| || || || | ||||||||||| |||||||| |||||||| Sbjct 523867 AATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 523926 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||| | ||||| ||||| || || | ||||| Sbjct 523927 ATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGTCTTC 523986 Query 104531 CCAG-TAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGT 104571 || | |||| ||||| || || |||| || ||| | |||| Sbjct 523987 CCTGTTAAGGGTTTTCACGAAAATCTCCACCTTGGCTGCAGT 524028 >seq171 Length=354554 Score = 140 bits (154), Expect = 7e-28 Identities = 158/210 (75%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||| || || || ||||| || |||||||| || | || ||||| ||| Sbjct 310998 AGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCAGA----GTACATCCATCTTCCAGT 310943 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| | || || || ||||||||||| ||| |||| |||| |||||| Sbjct 310942 TGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCTTCCTTATTCTGAATT 310883 Query 104474 TTTGCTTTTACATTTTCTA-CGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 || || ||||||||||||| || |||| |||| ||||| || || || ||||| || Sbjct 310882 TTGGCCTTTACATTTTCTATCGTTATCTGAGTGTTCAACCTCGAGAGTGATGGTCTTCCC 310823 Query 104533 AGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||| || |||||||| || Sbjct 310822 CATAAGAGTTTTTATGAAAATCTGCATCTT 310793 >seq2080 Length=3818131 Score = 129 bits (142), Expect = 1e-24 Identities = 161/222 (73%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| | |||||||||||||| || ||||| Sbjct 1111781 ACAAGATGAAGAGTGGACTCCTTTTGAATGTCGTAGTCAGATAGAGTATGTCCATCTTCC 1111722 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || ||||| || ||||||||||| ||||||||||||||||| Sbjct 1111721 AGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGG 1111662 Query 104471 ATCTTTGCTTTTACA---------TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || |||| | |||| | |||| ||||| ||| || || Sbjct 1111661 ATCTTGGCCTTTATATATTTTTTTTTTTTTTTTGTATTCGAGGGTTCAGCCTTGAGAGTG 1111602 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || |||| ||||| ||||| ||||||| ||| Sbjct 1111601 ATGGTCTTCCCTTTAAGGGTTTTCACAAAAGTCTGCATCTTG 1111560 >seq1669 Length=5184857 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 4062925 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCCTTTGCT 4062984 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||||| ||||||||||| |||||||| ||| | ||||| || || ||| | Sbjct 4062985 GCTATATTCTGGTTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 4063044 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 4063045 ATCAGCAGAGATGAAG 4063060 >seq2069 Length=3899032 Score = 118 bits (130), Expect = 2e-21 Identities = 147/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| | ||| | || |||| | ||| || ||||| ||||| || || Sbjct 1248472 GTAGACTCTTTTTTAATGT---AGCCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCG 1248528 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| | || || || ||||||||||| |||||||| ||| ||| ||||| || ||| Sbjct 1248529 GCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTACCCTAGATCTTGGCCTTT 1248588 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||| || || || |||||||||||| || | || ||||| || || | ||| Sbjct 1248589 ACATTTGCTTTTGTGTCCAAAGGTTCTACCTCAAGAGCGATGGTCTTCCCCATATGGGTT 1248648 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||| ||| ||| Sbjct 1248649 TTCACAAAAATCTTCATATTG 1248669 >seq54 Length=460634 Score = 118 bits (130), Expect = 2e-21 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||| |||||||||||||| || ||||| | || | || || ||||| || Sbjct 180515 GTGGACTCTTTTTGAATATTATAGTCTGAGAGAGTGCAGCCATTCTCCAGCTGTTTGCCC 180456 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||| || || | ||| || ||||| || || || || || || || || || ||||| Sbjct 180455 ACAAAGATCAGTCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTG 180396 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || | |||| ||||| || ||||| || || || || Sbjct 180395 ACATTTTCGATGGTGTCACT-GGCTGGACCTTGAGTGTGATGGTCTTGCCCGTCAGGGTC 180337 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 180336 TTCACAAAGATCTGCAT 180320 >seq1958 Length=4156293 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||| || |||||||| || || || || ||||| |||| |||||||| ||||| Sbjct 633083 TTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCCGATCAAGAGGAATTCCTTCCTTATC 633024 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| | ||| || | ||||||||||| ||||| ||||| ||| || || || || Sbjct 633023 CTGGAACTTGGCCTCTACATTTTCTATTGTATCCGAGGGTTCAGCCTAGAGAGTGATGGT 632964 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| |||||||| ||||| || || |||||||| || Sbjct 632963 CTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 632928 >seq1 Length=8996366 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||| | || || ||||| | |||||||| | || | || ||||| | | Sbjct 4848817 AGATGAAGAGTAAACTCCTTTTGAATGTGGTAGTCAGACAAGGTACACCCATCTTCCAAT 4848758 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || | || || |||| ||| |||||||| || ||||| ||| Sbjct 4848757 TGCTTGCCAGCAAAGATCAATACTTGCTGGTCAGAAGGAATTCCTTCCTTTTCCTGGATC 4848698 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||||| ||| | || ||| | ||| || | | ||||| || Sbjct 4848697 TTGGCCTTTACATTTTCTATTGTAACCAAAGCTTCAATCTCGAGAATGACGGTCTTTCCG 4848638 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGT 104571 ||||| ||||| | || |||||||| ||| | |||| Sbjct 4848637 GTAAGAGTTTTCAAGAAAATCTGCATCTTGGCTGCAGT 4848600 >seq2050 Length=1126483 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||| | |||||||| |||| ||||| || ||||| | ||| || || ||||| || Sbjct 569137 GTAAACTCTTTCTGGGTATTGTAGTCCGAGAGAGTGCAGTTGTCCTCCAGCTGTTTGCCT 569078 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||| | || || ||||| || || | || || ||||| Sbjct 569077 GCAAAAATCAGACACTGCTGGTCATGTGGGATGCCTTCCTTGTCTCGGATTTTAGCTTTG 569018 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || ||| | | || || ||||| ||||||||||||| || | ||||| Sbjct 569017 ACGTTATCAGTGGTGTTATTGGGCTCGACCTCATGTGTAATAGTCTTGCCCATCAGTGTC 568958 Query 104543 TTTACAAATATCTGCAT 104559 || || |||||||| Sbjct 568957 TTCGTGAAGATCTGCAT 568941 >seq2480 Length=531292 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||| ||||||||||| || ||| | | || || || || ||||| || ||||| Sbjct 206201 TCTTTCTAGATATTATAGTCTGAGAGAATGCGGCCATCCTCCAGCTGTTTGCCCACAAAA 206260 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || |||| | || || || || | ||| | || || || || ||||| |||||| Sbjct 206261 ATCAGGCTCTTCTCATTAGATGGGATGCTGTCTCTGTCTTGGATTTTAGCTTTGACATTT 206320 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || ||| || || || | |||||| ||| | || ||||| || | || |||| ||| Sbjct 206321 TCAGTGGTGTCACTTGGATGTACCTCAAGTATTATGGTCTTGCCCATCAGGGTTTCCACA 206380 Query 104549 AATATCTGCAT 104559 || | ||| || Sbjct 206381 AAGACCTGTAT 206391 >seq2475 Length=533748 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||| |||| |||| ||||||||||| ||| ||| |||| |||||||||| ||| Sbjct 493208 TTGCCAACAAAGATTAT--TCTGTTGATCAAGAGAAATTTCTTCCTTATCCTGAAACTTG 493265 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || | ||||||||||| ||||| | ||| ||||| || || || ||||| || | Sbjct 493266 GCCTGTACATTTTCTATTGTATCTGAGGTTTCAACCTCGAGAGTGATGGTCTTTCCCCTC 493325 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 || |||| ||||| || ||||| || Sbjct 493326 AG-CTTTTCACAAAAATTTGCATCTT 493350 >seq1391 Length=2313830 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || |||||||| ||||||||||| || ||||| || || || || ||||| || Sbjct 1067775 TGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGCTGTTTACC 1067716 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||||||| || || | ||| || || || ||||| || || || || ||||| Sbjct 1067715 CACAAAAATTAGATGCTACTGGTTAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTT 1067656 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||| ||| ||| ||| | || || | || ||||| || | || ||| | || || Sbjct 1067655 GGCATTCTCTGTGGTGTCGGTGGGCTCAATCTTTAGTGAGATGGCTTTGCCAATCAGAGT 1067596 Query 104542 TTTTACAAATATCTGCAT 104559 || ||| | || | ||| Sbjct 1067595 ATTCACAGAAATTTACAT 1067578 >seq1704 Length=2019467 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | ||||||||||| || || | || || | || || ||||| | Sbjct 1834696 TGGTGGTACTTTGTATCTAAAGGAATTGAGTATTTGGACACAGTGTTTTTTATCCTGAGG 1834755 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || || |||||||| | ||| |||||||| ||| Sbjct 1834756 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTCTATCATCACTGTACAATGTTTACATTG 1834815 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| | |||| ||||||| Sbjct 1834816 TGGTGGATTGGAATTAAGTGGGTGCCAGGGGGACAAG 1834852 >seq557 Length=6002282 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||| ||||||||||| || || || || | || | ||||| || |||||| Sbjct 132970 TCTTTCTAGATATTATAGTCTGAGAGTGTGAGGCCATTCTCCACATGTTTGCCCGCAAAA 132911 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT-GCTTTTACATT 104487 || || | ||| | |||| | || ||||| || || || || ||| ||||| ||||| Sbjct 132910 ATCAGACGCTGCTAGGCAGGTGAGATGCCTTCCTTGTCTTGGATTTTTAGCTTTGACATT 132851 Query 104488 TTCTACG-GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTA 104546 ||| | | | || || || | || || ||||| || ||||| ||||| || || || | Sbjct 132850 TTCAAGGATTGTCACTGGGCTTAACTTCGAGTGTGATGGTCTTGCCAGTCAGGGTCTTCA 132791 Query 104547 CAAATATCTGCAT 104559 | || |||||||| Sbjct 132790 CGAAGATCTGCAT 132778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151361666792920