Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq2337 109 5e-19 >seq2337 Length=679044 Score = 109 bits (120), Expect = 5e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| |||| ||||||||| Sbjct 369572 GGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 369631 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || || | | ||||||||| | ||||| ||||| || || |||||| Sbjct 369632 CCCCAGGCTGAGAACCAGAGCCTGGACATCAAGAAACACGTGAACTCCCTTGGGGAAAAG 369691 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTGC 129026 || || || || | || | || || |||||| Sbjct 369692 CTGAAGACACTCAGGCTGAGGCTTCGGCGCTGC 369724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 ||| || ||||| |||||||||||||| ||||| |||||||||||||||||| | ||||| Sbjct 371783 AGGGGTCTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACATAGAAACCTACAT 371842 Query 129164 GACTACTAA-ATAATAAAATG 129183 ||| | || || | |||||| Sbjct 371843 GACAATGAAGATGAAAAAATG 371863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447736463768800