Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq2337 116 4e-21 >seq2337 Length=679044 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||||||||||| || | Sbjct 369570 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 369629 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || ||| || || ||| | ||||||||||| || || || | Sbjct 369630 TGCCCCAGGCTGAGAACCAGAGCCTGGACATCAAGAAACACGTGAACTCCCTTGGGGAAA 369689 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || ||||| Sbjct 369690 AGCTGAAGACACTCAGGCT 369708 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| ||||||||||||||||| || |||||||| || || ||||| | Sbjct 371770 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACA 371829 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 371830 TAGAAACCTACATGACAATGAAGAT 371854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547362162822400