Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2035 188 1e-42 seq1806 129 8e-25 >seq2035 Length=3963056 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| ||||| | |||||| |||||||||||| || |||| || ||||| |||||| Sbjct 596361 GTCTGGAACAGACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 596420 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| || || | ||||| || || ||||||||||| |||||||||||||||||||| Sbjct 596421 CTGTTATGCTCTCGCAGCCAAATCGTGGCGTACATCATCAGACCAGGCACCAGGCCAAAC 596480 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| || |||| | ||| || | | || ||||||||||| | | Sbjct 596481 ACCTCCTGCCCCACAGCAAGCCGCAGGTGTTCAGGGATGTGAGGGGGATAGATCATCTCC 596540 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 596541 ACCTGACTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 596589 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| || || || || |||||| ||| ||| | || Sbjct 596933 TCTTACCCCATGACCCAGTCCTTTGGTAAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 596992 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || |||||||| ||| |||| || |||||||| || || |||||||||||||| Sbjct 596993 AAATTGATGGGTGAAATGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 597052 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || | || | || | || ||| ||||||||||| Sbjct 597053 AGGGATAAACTTTCTTCTTAGGAGAAATTTTTCCACAA 597090 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | | |||||| || |||| || || || || |||| || | Sbjct 597516 TCACCTTTCACACCCATGGCAGTTGGGCAGTCGTCAGCCACAGGGGGAAGAACTCTGGTA 597575 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| ||| | |||| || || || | Sbjct 597576 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTATAAGTT 597635 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||||||||||| ||| ||||| ||||| Sbjct 597636 GGTGGGCTGTCAATCAGATCTGATCTGGCTGAA 597668 >seq1806 Length=1669630 Score = 129 bits (142), Expect = 8e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || || || ||||| | |||||||| |||| | Sbjct 62039 TCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTTGACTTCCAGTACTCCGGAG 62098 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| |||| | | |||||| ||||||||||| || ||||| | || | || | Sbjct 62099 AACAGATGGGGTTCCCTAAGAGGCCCTTGAGGGAAAAGGGGGCCCCAATTTCTATCATAC 62158 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||| ||| || ||| || | | || ||| | ||| ||||||| Sbjct 62159 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGGAGTCCTGGGTAGAACTCCA 62218 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || ||||||||||| || || || | || || || || |||||||||||| Sbjct 62219 AGGCATCGATGTCTCCATACAGTTCCTCCAACTCAGCTGCCATCTCCTTTTCTCCT 62274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 ||||||||||| |||| | || |||||| | ||||| || |||| | ||| | | Sbjct 70316 CTTACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGGCCCATCTTGCCAGA--AGTTTTGA 70373 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||| ||| ||||| | Sbjct 70374 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGCGCCTTGGGGGT 70433 Query 10147 CGGGAGTGAAGGTCCTCC 10164 |||| |||| ||||| Sbjct 70434 CGGGTATGAACTCCCTCC 70451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708502747165600