Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 188 1e-42
seq1806 129 8e-25
>seq2035
Length=3963056
Score = 188 bits (208), Expect = 1e-42
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| ||||| | |||||| |||||||||||| || |||| || ||||| ||||||
Sbjct 596361 GTCTGGAACAGACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 596420
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| || || | ||||| || || ||||||||||| ||||||||||||||||||||
Sbjct 596421 CTGTTATGCTCTCGCAGCCAAATCGTGGCGTACATCATCAGACCAGGCACCAGGCCAAAC 596480
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| || |||| | ||| || | | || ||||||||||| | |
Sbjct 596481 ACCTCCTGCCCCACAGCAAGCCGCAGGTGTTCAGGGATGTGAGGGGGATAGATCATCTCC 596540
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| |||||||| || || ||||| ||||
Sbjct 596541 ACCTGACTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 596589
Score = 118 bits (130), Expect = 2e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||||| || || || || |||||| ||| ||| | ||
Sbjct 596933 TCTTACCCCATGACCCAGTCCTTTGGTAAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 596992
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||| || || |||||||| ||| |||| || |||||||| || || ||||||||||||||
Sbjct 596993 AAATTGATGGGTGAAATGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 597052
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185
|| | || | || | || ||| |||||||||||
Sbjct 597053 AGGGATAAACTTTCTTCTTAGGAGAAATTTTTCCACAA 597090
Score = 100 bits (110), Expect = 4e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | | |||||| || |||| || || || || |||| || |
Sbjct 597516 TCACCTTTCACACCCATGGCAGTTGGGCAGTCGTCAGCCACAGGGGGAAGAACTCTGGTA 597575
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||||||||| || || |||||||||||| ||| | |||| || || || |
Sbjct 597576 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTATAAGTT 597635
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| ||||||||||||| ||| ||||| |||||
Sbjct 597636 GGTGGGCTGTCAATCAGATCTGATCTGGCTGAA 597668
>seq1806
Length=1669630
Score = 129 bits (142), Expect = 8e-25
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||| || || |||| || || || || ||||| | |||||||| |||| |
Sbjct 62039 TCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTTGACTTCCAGTACTCCGGAG 62098
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| |||||| |||| | | |||||| ||||||||||| || ||||| | || | || |
Sbjct 62099 AACAGATGGGGTTCCCTAAGAGGCCCTTGAGGGAAAAGGGGGCCCCAATTTCTATCATAC 62158
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||||| ||| ||| || ||| || | | || ||| | ||| |||||||
Sbjct 62159 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGGAGTCCTGGGTAGAACTCCA 62218
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| ||||||||||| || || || | || || || || ||||||||||||
Sbjct 62219 AGGCATCGATGTCTCCATACAGTTCCTCCAACTCAGCTGCCATCTCCTTTTCTCCT 62274
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086
||||||||||| |||| | || |||||| | ||||| || |||| | ||| | |
Sbjct 70316 CTTACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGGCCCATCTTGCCAGA--AGTTTTGA 70373
Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146
| |||||||| ||||| ||||| |||| ||||||||||| | ||||| ||| ||||| |
Sbjct 70374 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGCGCCTTGGGGGT 70433
Query 10147 CGGGAGTGAAGGTCCTCC 10164
|||| |||| |||||
Sbjct 70434 CGGGTATGAACTCCCTCC 70451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708502747165600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |