Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2363 125 6e-24 seq1424 104 2e-17 seq54 100 3e-16 seq2201 82.4 7e-11 >seq2363 Length=646923 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||||||||| || | |||| ||||| || || ||||| || | ||| || Sbjct 187912 TTAGACACCTCCTCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTA 187853 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| || ||| | || |||||||| |||||| ||||||| | || ||||| || Sbjct 187852 GTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTC 187793 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || || || ||||| ||||| | || || ||||||||| ||| ||||| | | Sbjct 187792 AGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGG 187733 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || || || || || ||||| ||||||||||| Sbjct 187732 CTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187679 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||||| ||||| || | ||| || ||| | Sbjct 187677 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 187618 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| |||||| ||||||| || || ||||| || || || Sbjct 187617 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 187558 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 187557 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 187498 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 187497 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187451 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| || || ||||| || | ||| || ||| | Sbjct 186669 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 186610 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| |||||| ||||||| | || ||||| || || || Sbjct 186609 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186550 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 186549 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 186490 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 186489 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186443 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| || || ||||| || | ||| || ||| | Sbjct 187116 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 187057 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| |||||| ||||||| | || ||||| || || || Sbjct 187056 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186997 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 186996 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 186937 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 186936 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186890 Score = 100 bits (110), Expect = 3e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||||| || || ||||| || | ||| || ||| || ||| | Sbjct 186884 CGCAGGACCAGGTGCAGGGT-GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 186826 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| |||||| ||||||| | || ||||| || || || || || || ||| Sbjct 186825 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 186766 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| ||||| | | || || || | |||||| Sbjct 186765 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 186706 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 186705 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186671 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 94803 AGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCT 94862 |||||| || || ||||| || | ||| || ||| || ||| | || ||||||| Sbjct 187322 AGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCT 187263 Query 94863 GTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTT 94922 | |||||| ||||||| | || ||||| || || || || || || ||||| | || | Sbjct 187262 GCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCT 187203 Query 94923 TTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAG 94982 | ||||||||| ||| ||||| | | || || || | |||||||| || || | Sbjct 187202 TGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGG 187143 Query 94983 TAAGAGTTTTCACAAAGATCTGCAT 95007 | || || ||||| ||||||||||| Sbjct 187142 TCAGGGTCTTCACGAAGATCTGCAT 187118 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| || || ||||| || | ||| || ||| | Sbjct 186441 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 186382 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| |||||| ||||||| | || ||||| || || || Sbjct 186381 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 186322 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 186321 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 186262 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || | || || || ||||| ||||||||||| Sbjct 186261 TCCAGGGTGATGGTCTTCCGCGTCAGGGTCTTCACGAAGATCTGCAT 186215 >seq1424 Length=2309046 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| |||| || || || || || | ||| || || Sbjct 22984 CCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAA 23043 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| || ||||||| | || ||||| || |||||| Sbjct 23044 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 23103 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || ||||| || | | |||||| | | || || Sbjct 23104 ATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 23163 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 23164 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23210 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| |||| || || ||||| || | ||| ||||| Sbjct 23212 CCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGAA 23271 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| || ||||||| | || ||||| ||||| || Sbjct 23272 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 23331 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959 || ||||| || || | || || ||||| || | | |||||| | ||| || || Sbjct 23332 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCA-CTTGGCTCCAC 23390 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 23391 CTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23438 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| |||| || || || || || | ||| ||||| Sbjct 22756 CCACCCCTCAGACGTAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 22815 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| || ||||||| | || ||||| |||||||| Sbjct 22816 AGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 22875 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || | | |||||| | | || || Sbjct 22876 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 22935 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 22936 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 22982 >seq54 Length=460634 Score = 100 bits (110), Expect = 3e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||| ||| || || || ||||| | ||||| || | |||| | || ||| Sbjct 180528 CACCAAGGGCAGGGTGGACTCTTTTTGAATATTATAGTCTGAGAGAGTGCAGCCATTCTC 180469 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || ||||||| | || ||||| || || ||||| || || ||||| | Sbjct 180468 CAGCTGTTTGCCCACAAAGATCAGTCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTG 180409 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || ||||| ||| |||||| | | | ||| | | |||||||| || Sbjct 180408 GATTTTAGCTTTGACATTTTCGATGGTGTCA-CTGGCTGGACCTTGAGTGTGATGGTCTT 180350 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 180349 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 180320 >seq2201 Length=851120 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 || || ||||| ||||| || | |||| | || |||||| || || ||| ||| || Sbjct 771300 TAGACACCTCCCCTCAAGCGAAGGACCAGGCACAGAGTAGACTCTTTCTGCCTGTTGTAG 771241 Query 94835 TCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 | | || ||| ||| |||||||| || | | | ||||| || || | ||| Sbjct 771240 TTGGACAAGGTGCGCCCATCTTCCAGCTGCTTCCTGGCGAAGATCGGCCTCTGTTCATCA 771181 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || | || ||||||||||| | || || ||||||||| |||| ||||| | | Sbjct 771180 GGGGAGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTCCCGATGGTGTCGCTGGGC 771121 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | | |||||| || | || | || ||||| ||||||||||||| Sbjct 771120 TCCACCTCCAGGGCGATGGTCTTCTCGGTCAAGGTCTTCACGAAGATCTGCATGC 771066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277246936400