Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2147 136 6e-28 seq12 136 6e-28 seq2031 123 4e-24 >seq2147 Length=952135 Score = 136 bits (150), Expect = 6e-28 Identities = 195/272 (72%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || ||||| |||||||| || ||||||||||| || | Sbjct 4251 CGCCAAGCGCCACCGCAAGGTC-CTGCGAGACAACATCCAGGGCATCACCAAGCCGGCCA 4193 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || || | || || |||| Sbjct 4192 TCCGGCGCCTGGCCCGGCGGGGAGGGGTCAAGCGCATCTCCGGGCTGATTTACGAGGAGA 4133 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 4132 CCCGGGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGG 4073 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | || || || | || || || | Sbjct 4072 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGACAGG 4013 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | || | | ||||| || ||| | ||| || Sbjct 4012 GGCGCACCCTCTATGGCTTCGGAGGCTAAGCT 3981 >seq12 Length=508329 Score = 136 bits (150), Expect = 6e-28 Identities = 195/272 (72%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || ||||| |||||||| || ||||||||||| || | Sbjct 448342 CGCCAAGCGCCACCGCAAGGTC-CTGCGAGACAACATCCAGGGCATCACCAAGCCGGCCA 448284 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || || | || || |||| Sbjct 448283 TCCGGCGCCTGGCCCGGCGGGGAGGGGTCAAGCGCATCTCCGGGCTGATTTACGAGGAGA 448224 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 448223 CCCGGGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGG 448164 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | || || || | || || || | Sbjct 448163 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGACAGG 448104 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | || | | ||||| || ||| | ||| || Sbjct 448103 GGCGCACCCTCTATGGCTTCGGAGGCTAAGCT 448072 Score = 136 bits (150), Expect = 6e-28 Identities = 195/272 (72%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || ||||| |||||||| || ||||||||||| || | Sbjct 454726 CGCCAAGCGCCACCGCAAGGTC-CTGCGAGACAACATCCAGGGCATCACCAAGCCGGCCA 454668 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || || | || || |||| Sbjct 454667 TCCGGCGCCTGGCTCGGCGGGGAGGGGTCAAGCGCATCTCCGGGCTGATTTACGAGGAGA 454608 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 454607 CCCGGGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGAGACGCGGTCACCTACACGG 454548 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | || || || | || || || | Sbjct 454547 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGACAGG 454488 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | || | | || || || ||| | ||| || Sbjct 454487 GGCGCACCCTCTACGGCTTCGGAGGCTAAGCT 454456 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 95038 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 95097 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 95098 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 95157 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 95158 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 95217 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 95218 GCACGCCAAACGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 95277 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 95278 CCGCACGCTCTACGGCTTCGG 95298 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 334807 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 334748 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 334747 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 334688 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 334687 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 334628 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 334627 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 334568 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || ||||| || Sbjct 334567 CCGCACGCTCTACGGTTTCGG 334547 Score = 127 bits (140), Expect = 3e-25 Identities = 192/272 (71%), Gaps = 1/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 300656 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 300715 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 300716 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 300775 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 300776 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 300835 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 300836 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 300895 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA-ATCT 16702 ||| | | | || || || || |||| |||| Sbjct 300896 CCGCACGCTCTACGGCTTCGGTGGTTAGATCT 300927 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 203333 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 203274 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 203273 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 203214 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 203213 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 203154 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 203153 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 203094 Query 16672 CCG 16674 ||| Sbjct 203093 CCG 203091 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 323274 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 323215 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 323214 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 323155 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 323154 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 323095 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 323094 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 323035 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 323034 CCGCACGCTCTACGGCTTCGG 323014 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 400701 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 400642 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 400641 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 400582 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 400581 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 400522 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 400521 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 400462 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 400461 CCGCACGCTCTACGGCTTCGG 400441 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || || |||||||| || ||||||||||| || | Sbjct 356460 CGCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 356518 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 356519 TCCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 356578 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || || || ||| || | Sbjct 356579 CCCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 356638 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 356639 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 356698 Query 16671 GCCG 16674 |||| Sbjct 356699 GCCG 356702 >seq2031 Length=1166631 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1160322 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1160263 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 1160262 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 1160203 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 1160202 CCGCGGGGTGCTCAAGGTCTTCCTAGAGAACGTGATCCGGGACGCCGTCACCTACACGGA 1160143 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 1160142 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 1160083 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 1160082 CCGCACGCTCTACGGCTTCGG 1160062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072923375570