Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1841 96.9 9e-15 seq654 87.8 5e-12 >seq1841 Length=1603521 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || || |||| |||||||| || || || ||| Sbjct 624317 GCTCAGCAGCTTTGGTACGCCATCATTGAGTCTCAGACCGAGACAGGTACCCCATACATG 624258 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| ||||||||| |||| || ||||| | Sbjct 624257 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAAAACCTGGGAACAATCAAATGC 624198 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || || ||| Sbjct 624197 AGCAACCTGTGTACAGAAATAGTAGAGTATACC 624165 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| ||||| |||||||||||||| | Sbjct 625679 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGATATCTTTGAGTTTCTTGATTTA 625620 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| |||||||| ||| ||| || | || || |||| ||| |||||| || Sbjct 625619 AAGAAGAACACAGGAAAAGAAGAACAGCGCGCCAGGGACCTTTTCTTTGCCCTTTGGATT 625560 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 625559 CCGGATCTCTTCATGAAACGAGTGGAG 625533 >seq654 Length=93227 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || ||||| || ||||||||||| | ||| | Sbjct 53914 GAACGTGTTGTCGCTTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCG 53973 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 53974 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACCTTTTCCAATGAACTTATT 54033 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 54034 AGCAGAGATGAGG 54046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303312018947180