Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1767 91.5 1e-13 seq1689 86.0 5e-12 seq1424 82.4 6e-11 >seq1767 Length=1785757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || |||||||| |||||| || | ||| | ||||||||| ||| Sbjct 523922 GATAAGGAAGGAATTCCTCCTGATCAGCGAAGACTGATCTTTGCTGACAAACAATTGGAA 523863 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| || | || || ||||||||||| ||||||||| | ||| | |||||| Sbjct 523862 GATGGATGTACCTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 523803 Query 115499 AGA 115501 ||| Sbjct 523802 AGA 523800 >seq1689 Length=2064527 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 115380 ATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAG 115439 |||| ||||| | || | ||||||||||||| || | ||| ||||| ||| | |||| Sbjct 174877 ATAAGGAAGGAATTCCTCCTCATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAG 174818 Query 115440 ATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGA 115499 ||| | ||| || | ||||| | ||||||||| ||||| ||| | ||| | ||||||| Sbjct 174817 ATGGACATACCTTGTCTGATTACAGCATTCAAAAGGAGTCCACTCTTCATCTCGTGTTGA 174758 Query 115500 GA 115501 || Sbjct 174757 GA 174756 >seq1424 Length=2309046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| || || || || || || || || ||||| ||| | ||| ||| || Sbjct 23669 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCC 23610 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||||| | | | ||||| || || ||||| |||||| |||| || Sbjct 23609 AGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGAC 23550 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||| ||||| || | ||||||| | || | | ||||| Sbjct 23549 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 23490 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||| || | ||| |||| || | || |||| || Sbjct 23489 AACATTCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGG 23440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425331092138800