Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2363 123 2e-23 seq1424 111 1e-19 >seq2363 Length=646923 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||||| Sbjct 187117 CCCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 187058 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | |||| |||| || || || ||| | || |||| ||| ||||| || Sbjct 187057 CAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 186998 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 186997 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 186940 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || |||||||| || || || || ||||||||| Sbjct 186939 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 186889 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||||| Sbjct 186670 CCCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 186611 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | |||| |||| || || || ||| | || |||| ||| ||||| || Sbjct 186610 CAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 186551 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 186550 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 186493 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || || |||||||| Sbjct 186492 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186443 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || ||||||||||||| || ||| | |||| |||| || Sbjct 187320 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGC 187261 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || |||| ||| ||||| || | |||||| ||||| || || Sbjct 187260 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 187201 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| ||||||| |||| ||||||||| || |||| Sbjct 187200 GC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGG 187143 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || |||||||| Sbjct 187142 TCAGGGTCTTCACGAAGATCTGCAT 187118 Score = 114 bits (126), Expect = 1e-20 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||||| Sbjct 186442 CCCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 186383 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | |||| |||| || || || ||| | || |||| ||| ||||| || Sbjct 186382 CAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 186323 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 186322 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 186265 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| || | ||||| || || || || ||||||||| Sbjct 186264 ACCTCCAGGGTGATGGTCTTCCGCGTCAGGGTCTTCACGAAGATCTGCATT 186214 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||||| || ||| | |||| Sbjct 187890 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 187831 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 187830 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 187771 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||||| ||||||| |||| |||||||| Sbjct 187770 TGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGG 187713 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || || || |||||||| Sbjct 187712 TCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187679 Score = 113 bits (124), Expect = 4e-20 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||| ||||||| || ||||||||||||| || ||| | |||| Sbjct 186882 CAGGACCAGGTGCAGGGTG-ACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 186824 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 186823 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 186764 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||||| ||||||| |||| ||||||| Sbjct 186763 CTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 186706 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || || || |||||||| Sbjct 186705 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 186671 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| || |||||||| || ||||||||||||| Sbjct 187678 CCCACCTCTGAGACGGAGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 187619 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | |||| |||| || || || ||| | || | || ||| ||||| || Sbjct 187618 CAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 187559 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 187558 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 187501 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || || |||||||| Sbjct 187500 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187451 >seq1424 Length=2309046 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| || ||||| || || |||||||| || | | || | | ||| Sbjct 22771 AGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCC 22830 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||| ||| | ||||||| ||| ||||| ||| | ||| || || || Sbjct 22831 TCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 22890 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||| ||| ||||| |||||||| Sbjct 22891 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGG 22948 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || || ||||||||||| Sbjct 22949 TCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 22982 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| || ||||| || || ||||||||||| | | || | | || Sbjct 22998 CAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 23057 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| |||||||| ||| | || |||| ||| ||||| ||| | || || || || Sbjct 23058 CTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTATC 23117 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||| ||| ||||| ||||||| Sbjct 23118 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATG 23175 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || || || |||||||| Sbjct 23176 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405075706845100