Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq54 98.7 9e-16 >seq54 Length=460634 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/215 (71%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||||||| || | || || | | Sbjct 180320 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTCAAGGTCCAGCCAG-T 180378 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| || ||||| || || ||||||||||| Sbjct 180379 GACACCATCGAAAATGTCA---AAGCTAAAATCCAA-GACAAGGAGGGCATTCCACCTGA 180434 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||| |||||||| | || ||| ||||| | || || Sbjct 180435 CCAGCAGCGACTGATCTTTGTGGGCAAACAGCTGGAGAATGGCTGCACTCTCTCAGACTA 180494 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGC 25209 |||||||||||||| ||||| || | || |||| Sbjct 180495 TAATATTCAAAAAGAGTCCACCCTGCCCTTGGTGC 180529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314849849350