Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1424 116 3e-21 seq54 109 5e-19 seq2363 107 2e-18 seq1935 105 6e-18 seq1767 91.5 1e-13 seq2309 89.7 4e-13 seq2256 87.8 2e-12 >seq1424 Length=2309046 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || ||||||||| ||| Sbjct 22982 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 22923 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || ||||| || || || || || || Sbjct 22922 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 22863 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||||||| | |||||| |||||| | || ||||||||| Sbjct 22862 CAGAGGCTTATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 22803 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| ||||| || ||| | ||| Sbjct 22802 ATTCAGAAAGAGTCGACCCTGCAT 22779 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || ||||||||| ||| Sbjct 23210 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 23151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || ||||| |||||||| || || || Sbjct 23150 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAG 23091 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | |||||| |||||| | || || |||||| Sbjct 23090 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGACTACAAC 23031 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| || ||| | ||| | || |||| || | || ||| Sbjct 23030 ATTCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGCGGT 22983 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | ||||| || || |||| || ||||||||| Sbjct 23672 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAA 23613 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || || ||||| || || || || Sbjct 23612 CCCAGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCA 23553 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 23552 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 23493 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || || ||| | ||| | || |||| || | || ||| Sbjct 23492 TACAACATTCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGGT 23439 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| | | Sbjct 23438 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCAAGT 23379 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || ||||| || || || || || || Sbjct 23378 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 23319 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||||||| | |||||| |||||| | || ||||||||| Sbjct 23318 CAGAGGCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTTCTGATTACAAC 23259 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | ||| | || |||| || | || ||| Sbjct 23258 ATTCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGGGGCGGT 23211 >seq54 Length=460634 Score = 109 bits (120), Expect = 5e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || | || | ||| Sbjct 180318 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTCAAGGTCCAG-CCA 180376 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| |||||||| || | Sbjct 180377 GTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACC 180436 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || || || |||| ||||||||| | ||| || | |||| |||| || || | Sbjct 180437 AGCAGCGACTGATCTTTGTGGGCAAACAGCTGGAGAATGGCTGCACTCTCTCAGACTATA 180496 Query 22397 ACATTCAAAAAGAATCCACC 22416 | ||||||||||| |||||| Sbjct 180497 ATATTCAAAAAGAGTCCACC 180516 >seq2363 Length=646923 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | |||||||| || |||| || || ||||| ||| Sbjct 187678 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 187737 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || ||||||||||| || || || || || || Sbjct 187738 CGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCA 187797 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || ||||||| | ||||| ||||| Sbjct 187798 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 187857 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || || || |||||| | || | || | || ||| | |||||| Sbjct 187858 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTTCGCTTGAGAGGAGGT 187906 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | |||||||| || |||| || || ||||| ||| Sbjct 186442 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 186501 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 186502 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 186561 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || ||||||| | ||||| ||||| Sbjct 186562 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 186621 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 186622 CATCCAGAAGGAGTCCACC 186640 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | |||||||| || |||| || || ||||| ||| Sbjct 187117 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 187176 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 187177 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 187236 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || ||||||| | ||||| ||||| Sbjct 187237 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 187296 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 187297 CATCCAGAAGGAGTCCACC 187315 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||| || |||| || || ||||| ||| | Sbjct 186890 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 186949 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 186950 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 187009 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || || ||||||| | ||||| |||||| Sbjct 187010 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 187069 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 187070 ATCCAGAAGGAGTCCACC 187087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | |||||||| || |||| || || ||||| ||| Sbjct 186670 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 186729 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 186730 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 186789 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| || ||| | || || ||||||| | ||||| ||||| Sbjct 186790 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 186849 Query 22398 CATTCAAAAAGAATC 22412 ||| || || || || Sbjct 186850 CATCCAGAAGGAGTC 186864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | |||||||| || |||| || || ||||| ||| Sbjct 187450 GATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 187509 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 187510 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 187569 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| || ||| | || || ||||||| | ||||| ||||| Sbjct 187570 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 187629 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || || ||| Sbjct 187630 CATCCAGAAGGAGTCTACC 187648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || | || || |||| || || ||||| ||| | Sbjct 186215 ATGCAGATCTTCGTGAAGACCCTGACGCGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 186274 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || || || || Sbjct 186275 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 186334 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || || ||||||| | ||||| |||||| Sbjct 186335 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 186394 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 186395 ATCCAGAAGGAGTCCACC 186412 >seq1935 Length=6884337 Score = 105 bits (116), Expect = 6e-18 Identities = 144/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| | ||| | ||| | | || |||| | | || | ||| Sbjct 3241802 AGATGCAAATCTTTGTGATAACCCTGACCCGCGAGACCATCACACACGCGGTCAAGCCCA 3241743 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||||| || || |||| ||||| |||||| ||||||| || | ||| | | Sbjct 3241742 GTGATACCACTGAGAATGGCAAAGCTAAAATCCAAGACGAGGAGGGCATCCTACCTGC-C 3241684 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||||||||||||| | |||||| |||||| |||| || |||| Sbjct 3241683 AGCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTACA 3241624 Query 22397 ACATTCAAAAAGAATCCACC 22416 | || |||||||| |||||| Sbjct 3241623 ATATCCAAAAAGAGTCCACC 3241604 >seq1767 Length=1785757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACT-TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| || | ||||| || ||||| ||||| || || || |||||||||| || ||| | Sbjct 524019 AAGGTGGAGATTTTCGTGAAAACCCTTAACAGGGAAGACCTTCACTCTTGAGGTTGAACC 523960 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | | ||| | || || | || || || || || ||||| || ||||| || || Sbjct 523959 CTCGGTTACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 523900 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| | | | || || ||||| | |||||| || || ||| | ||| | || || || Sbjct 523899 TCAGCGAAGACTGATCTTTGCTGACAAACAATTGGAAGATGGATGTACCTTGTCTGACTA 523840 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||||||| || || || | ||| | || ||| || Sbjct 523839 CAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGA 523800 >seq2309 Length=718661 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || | | || || || |||| || || || || || Sbjct 498496 AGATGCAGATCTTCGTGAAGACCGTGATGGGCAAGACCATCACACTCGAGGTCGAGTTCA 498437 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || | |||||| ||||| | |||||||||||| || ||||| | | Sbjct 498436 GTGACACCACTGATAACATCAAAGCTAAAATCCGAGACAAGGAGGGCATCCCACCTGGCC 498377 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| || |||||| |||||||| | |||||| | |||| |||| || || Sbjct 498376 AGCAGTGTCTGATTTTTGCCTGCAAACAGCTGGAGGATGGCTGCACTTTCTCAGACTATG 498317 Query 22397 ACATTCAAAAAGAATCCACCAT 22418 | || || ||||| |||||||| Sbjct 498316 ATATCCAGAAAGAGTCCACCAT 498295 >seq2256 Length=771247 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 22294 ATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTT 22353 |||||| ||||| |||||||||||||| || ||||| || || || ||||| || ||| Sbjct 650702 ATCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTT 650761 Query 22354 GCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCC 22413 || ||||||| | | || ||| |||||| |||| || || || | |||| ||| ||| Sbjct 650762 GCGGGCAAACGGCTGGAAGATAGCCGCACTCTCTCAGACTAAAATA-TCAAGAAG--TCC 650818 Query 22414 ACCATACATTTAGT 22427 | | |||| || || Sbjct 650819 AGCCTACACTTGGT 650832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419715262566850