Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1960 87.8 2e-12 >seq1960 Length=1325267 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 20270 AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATAC 20329 |||||||| |||||||||| || || || | || ||||||||| | || ||||| ||| Sbjct 896351 AGGGAATATTTGGCAATGTTGAAGGGCACACTCAGGCCCATGTCTGCTGATCTCTGGTAC 896410 Query 20330 AGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGA 20389 ||||| ||||| ||||||| || | ||| | | || || | |||||| | || Sbjct 896411 AGCTGGCAGGACAGCTCACTGTTCACCACACAGAGCTGGCAAAGGGCATGACAGAGAGGC 896470 Query 20390 AGCGCCAT-CAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTG 20448 || ||||| | | || || || || ||||| | ||||| ||||||||||| || | Sbjct 896471 AGGGCCATGCGAGGAAAA-TCTTTTGGATTCCAAGAACACAGGATGATTCTTCTGTCATT 896529 Query 20449 CGGATTATTTTTTAT 20463 || || |||| || Sbjct 896530 GGGGTTGGTTTTGAT 896544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441359062271600