Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1424 86.0 5e-12 >seq1424 Length=2309046 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| ||||| |||||||| || || ||||||||||||||||||||| | Sbjct 23439 ACCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGA 23498 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || |||| |||||||| ||||| || || | |||||| || | Sbjct 23499 AAGAGTG-CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGAG 23557 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || || || ||| || || ||| | ||| | | ||| | | ||| Sbjct 23558 GGATGCCTTCCTTATCCTGGATCTTGGCCTTTA-CATTCTCGATGGTGTCACTGGGTTCC 23616 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 ||| | || || || || ||||| || || ||||| |||||||||||||| Sbjct 23617 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 23669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397050350396980