Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1424 123 6e-23 seq557 111 4e-19 seq54 107 5e-18 seq2256 95.1 3e-14 seq1767 95.1 3e-14 seq1935 84.2 5e-11 seq446 84.2 5e-11 >seq1424 Length=2309046 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | || ||||| || || || | ||||| ||||| ||| Sbjct 23020 TCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAG 23079 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || ||||| || Sbjct 23080 ATGAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTGGCCTTCACATTC 23139 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | ||| ||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 23140 TCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 23199 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 23200 AAGATCTGCAT 23210 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | || ||||| || || || | ||||| ||||| ||| Sbjct 22792 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAG 22851 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || ||||| ||| ||||| ||||||||||| || || ||||| Sbjct 22852 ATAAGCCTCTGCTGG---TCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 22908 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | ||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 22909 TTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 22968 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 22969 ACGAAAATCTGCAT 22982 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 23476 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 23535 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || ||||| ||| ||||| ||||||||||| || || || || Sbjct 23536 ATGAGCCTCTGCTGG---TCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTTACA 23592 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | ||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 23593 TTCTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 23652 Query 288460 ACGAATATCTGCATTATG 288477 ||||| || |||||| || Sbjct 23653 ACGAAGATTTGCATTTTG 23670 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || | || ||||| || || || | ||||| ||||| ||| Sbjct 23248 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAG 23307 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || ||||| ||||||||||| || || ||||| Sbjct 23308 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 23364 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 23365 TTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 23424 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 23425 ACGAAGATCTGCAT 23438 >seq557 Length=6002282 Score = 111 bits (122), Expect = 4e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| | |||||||||||| | ||| ||| | || | || | ||||| || || || Sbjct 132970 TCTTTCTAGATATTATAGTCTGAGAGTGTGAGGCCATTCTCCACATGTTTGCCCGCAAAA 132911 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA-TTTTCGCTTTCACGTT 288401 ||||||||||| | | | || ||| ||||| || || |||| |||| ||||| || || Sbjct 132910 ATCAGACGCTGCTAGGCAGGTGAGATGCCTTCCTTGTCTTGGATTTTTAGCTTTGACATT 132851 Query 288402 TTCTA-TAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 ||| | | || || | | |||||||| ||||| ||||| || ||||| ||||| | Sbjct 132850 TTCAAGGATTGTCACTGGGCTTAACTTCGAGTGTGATGGTCTTGCCAGTCAGGGTCTTCA 132791 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 132790 CGAAGATCTGCAT 132778 >seq54 Length=460634 Score = 107 bits (118), Expect = 5e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| ||||||||||| | ||| |||| || | || | ||||| || | ||| Sbjct 180509 TCTTTTTGAATATTATAGTCTGAGAGAGTGCAGCCATTCTCCAGCTGTTTGCCCACAAAG 180450 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | ||| || || || || || |||||||| ||||| || ||| Sbjct 180449 ATCAGTCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTT 180390 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | | || | ||| ||||| ||||| || ||||| ||||| || Sbjct 180389 TCGATGGTGTCACT-GGCTGGACCTTGAGTGTGATGGTCTTGCCCGTCAGGGTCTTCACA 180331 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 180330 AAGATCTGCAT 180320 >seq2256 Length=771247 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 288291 GATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG 288350 |||||| ||||| | ||| ||||| | ||||| | |||| || || || |||||||| Sbjct 650809 GATATTTTAGTCTGAGAGAGTGCGGCTATCTTCCAGCCGTTTGCCCGCAAAAATCAGACG 650750 Query 288351 CTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA 288410 ||| || | |||||| || || || || |||||||| ||||| | |||||| | | Sbjct 650749 CTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGATGTTTTCAGTGGT 650690 Query 288411 ATCGCTCGATTCTACTTCGAGCGTGATCGTCT--TCCC--GGTCAGAGTCTTGACGAATA 288466 || || | || || || | ||||| |||| |||| |||||| ||||| || || | Sbjct 650689 GTCACTGGGCTCGACCTC--GTGTGATGGTCTTGTCCCAAGGTCAGGGTCTTCACAAAGA 650632 Query 288467 TCTGCAT 288473 ||||||| Sbjct 650631 TCTGCAT 650625 >seq1767 Length=1785757 Score = 95.1 bits (104), Expect = 3e-14 Identities = 155/221 (70%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | || ||||||| || || ||||| || || ||||| | | || | | Sbjct 523798 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACAT 523857 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTGGGATTCCT 288372 || ||||| |||||||| | || |||||||| | |||| | || | || |||||| Sbjct 523858 CCATCTTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGA---GGAATTCCT 523914 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || ||||||||||| || || || || |||||||| | | | | ||| || || || Sbjct 523915 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGA 523974 Query 288433 GTGATCGTCTTCCC-GGTCAGAGTCTTGACGAATATCTGCA 288472 |||| |||||||| | | || || || ||||| |||| || Sbjct 523975 GTGAAGGTCTTCCCTGTTAAGGGTTTTCACGAAAATCTCCA 524015 >seq1935 Length=6884337 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||||||||| || || | ||| ||||| || || || | ||||| || || || Sbjct 3241611 TCTTTTTGGATATTGTACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAA 3241670 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | | | |||| || || | || |||||||| ||||| | || Sbjct 3241671 ATCAGACGCTGCTG-GCAGGTAGGATGCCCTCCTCGTCTTGGATTTTAGCTTTGCCATTC 3241729 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | ||| || | | || || | ||||| |||| | |||||| || | || Sbjct 3241730 TCAGTGGTATCACTGGGCTTGACCGCGTGTGTGATGGTCTCGCGGGTCAGGGTTATCACA 3241789 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 3241790 AAGATTTGCAT 3241800 >seq446 Length=6116713 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 288290 GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC 288349 ||||||||||||| | || |||| | | || | ||||| ||||| || || |||| Sbjct 3276547 GGATATTATAGTCTGAGAAAATGCGGCTATTCTCCAGCTGTTTGCCTGCAAAAATTAGAC 3276488 Query 288350 GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAG 288409 |||| || || |||||| || || || || | |||||| |||| |||||||| | | Sbjct 3276487 GCTGCTGGTCATGTGGGATGCCCTCCTTGTCTTCGATTTTAACTTTGACGTTTTCAGTGG 3276428 Query 288410 AATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCT 288469 ||| | | || || ||||| |||| |||| || ||||| || || || |||| Sbjct 3276427 TATCAGTGGGCTCGACCTCGAGTATGATGATCTTGCCCATCAGAAAATTCACAAAGATCT 3276368 Query 288470 GCAT 288473 |||| Sbjct 3276367 GCAT 3276364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179616765338220