Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1424 158 1e-33 seq1689 98.7 1e-15 seq1 98.7 1e-15 seq1767 89.7 5e-13 seq2080 86.0 6e-12 seq171 86.0 6e-12 seq54 86.0 6e-12 >seq1424 Length=2309046 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || || |||||||||||||| | | ||||| | ||| Sbjct 23455 AGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 23514 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| ||||| || ||||| || || Sbjct 23515 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 23574 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| ||| | || |||| || |||||||| | || | |||| Sbjct 23575 TGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTC 23634 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||||| || || ||||| ||||||||||| Sbjct 23635 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 23669 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | || || ||||| | ||||| ||||| ||||||||||| || | Sbjct 22983 ACCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGA 23042 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||| ||||| ||| | ||||||| ||||||||| ||||| Sbjct 23043 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 23102 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| ||| ||| | || |||| || ||||| Sbjct 23103 AATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCAC 23162 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||||||||| || || ||||| || ||||| Sbjct 23163 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23210 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| ||||| |||||||||||||| | | ||||| | || Sbjct 22771 AGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCC 22830 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| ||| | || |||| ||||||||| ||||| || ||||| || || Sbjct 22831 TCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 22890 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || |||||||| | || | |||| Sbjct 22891 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGTC 22950 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || |||||||| ||||| Sbjct 22951 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 22982 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | || || ||||| | ||||| || || |||||||||||||| | Sbjct 23211 ACCGCCCCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGA 23270 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||| ||||| ||| | ||||||| ||||||||| || || Sbjct 23271 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 23330 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| ||| ||| | || |||| | ||||| Sbjct 23331 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCAC 23390 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || | |||||||||||||| || || ||||| || ||||| Sbjct 23391 CTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23438 >seq1689 Length=2064527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || ||||||||| ||||||| | | ||| | | Sbjct 174756 TCTCAACACGAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGGTATGTCC 174815 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| | |||||||||||||| || Sbjct 174816 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTCCTTCCTT 174875 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 | || || || ||||| | | | | |||||| ||| || || || | ||| | Sbjct 174876 ATTCTGGATCTTGGCCTTTATATCTCCTATTGTATCCAAGGCTTCAACCTCGAGAGTAAT 174935 Query 64408 GGTCTTGCC-GGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 |||||| || || | ||||| | |||||| ||| | ||| Sbjct 174936 GGTCTTCCCTTGTAAGGGTTTTCAAGAAAATCTGCGTCTTA 174976 >seq1 Length=8996366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || | || |||||||||| ||| || | | ||| | | | ||||| | Sbjct 4848817 AGATGAAGAGTAAACTCCTTTTGAATGTGGTAGTCAGACAAGGTACACCCATCTTCCAAT 4848758 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| | || | |||||||| | |||||||||||| ||||| || || Sbjct 4848757 TGCTTGCCAGCAAAGATCAATACTTGCTGGTCAGAAGGAATTCCTTCCTTTTCCTGGATC 4848698 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | |||| | || || | || | | | |||||||| ||| Sbjct 4848697 TTGGCCTTTACATTTTCTATTGTAACCAAAGCTTCAATCTCGAGAATGACGGTCTTTCCG 4848638 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | |||||| | |||||| ||||| || Sbjct 4848637 GTAAGAGTTTTCAAGAAAATCTGCATCTT 4848609 >seq1767 Length=1785757 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||||||||| || | | ||| | | Sbjct 523800 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACATCC 523859 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | || ||| | ||| | || || | |||| || |||||||||||||| || Sbjct 523860 ATCTTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTCCTT 523919 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | |||| | || || || || | ||| | Sbjct 523920 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAA 523979 Query 64408 GGTCTTGCCGGTCAA-AGTTTTTACGAAAAT 64437 |||||| || || || ||||| |||||||| Sbjct 523980 GGTCTTCCCTGTTAAGGGTTTTCACGAAAAT 524010 >seq2080 Length=3818131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||||| ||| || | | || | | Sbjct 1111788 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTCGTAGTCAGATAGAGTATGTCC 1111729 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || |||| ||||| || ||||||||||||||||| Sbjct 1111728 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTT 1111669 Query 64348 TTCTTGTATTTTTTGCTTTA 64367 || || || || ||||| Sbjct 1111668 ATCCTGGATCTTGGCCTTTA 1111649 >seq171 Length=354554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | | | ||||||| || || || |||||||||||||| || Sbjct 311020 ACCACCACGAAGTCTCAACGCAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTC--- 310964 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || |||||||| ||| | | || | ||||| || ||||| Sbjct 310963 -AGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGG 310905 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCA-CTGTATCACCGGCGTCCA 64394 |||| |||| || | || ||||| ||||||| || | | |||| | || | Sbjct 310904 AATTTCTTCCTTATTCTGAATTTTGGCCTTTACATTTTCTATCGTTATCTGAGTGTTCAA 310845 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | ||| | |||||| || | | |||||||| |||||| ||||| || Sbjct 310844 CCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTTATGAAAATCTGCATCTT 310793 >seq54 Length=460634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||||||||| || || |||| || |||| | | || ||||| ||||| Sbjct 180515 GTGGACTCTTTTTGAATATTATAGTCTGAGAGAGTGCAGCCATTCTCCAGCTGTTTGCCC 180456 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || ||||| || || || ||||| | |||| ||||| Sbjct 180455 ACAAAGATCAGTCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGA-TTTTAGCTTT 180397 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || |||| ||| | || | | || | ||||||||| |||| || Sbjct 180396 GACATTTTCGATGGTGTCACTGGC-TGGACCTTGAGTGTGATGGTCTTGCCCGTCAGGGT 180338 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 180337 CTTCACAAAGATCTGCAT 180320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499629248555600