Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 156 6e-33
>seq2035
Length=3963056
Score = 156 bits (172), Expect = 6e-33
Identities = 169/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || |||| |||||||| ||||||| || || || ||||| || ||||| || ||
Sbjct 596361 GTCTGGAACAGACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 596420
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| || |||| |||||| || |||||||||||||| | ||| ||||| | ||||||
Sbjct 596421 CTGTTATGCTCTCGCAGCCAAATCGTGGCGTACATCATCAGACCAGGCACCAGGCCAAAC 596480
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | |||||| |||| ||||| | || || | | || | ||| | ||| | |
Sbjct 596481 ACCTCCTGCCCCACAGCAAGCCGCAGGTGTTCAGGGATGTGAGGGGGATAGATCATCTCC 596540
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
||||| | |||||||| ||||| |||||||| || || |||||
Sbjct 596541 ACCTGACTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 596584
Score = 145 bits (160), Expect = 1e-29
Identities = 202/283 (71%), Gaps = 0/283 (0%)
Strand=Plus/Plus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
||||| || |||||||| || ||||| |||||||| | ||||| || | ||| |
Sbjct 594786 GGACAACCTTTCACATTATTGCAGATGAGAGACTGAATTGAGGCGGTGTTGATGATTTTA 594845
Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013
|| ||||| || || || || ||||| || |||||||| || || || || ||
Sbjct 594846 AAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTGAGGAGAACATATAGGATTA 594905
Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073
|||| || ||||||||||| || || || || | || | || ||||||| ||||||
Sbjct 594906 CCCATAAGTCCTTTCAAGGAGAAAGGTGCTCCAACTTCTACCATAGTCTCACCAAAGATG 594965
Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133
||| | ||||| || ||||| || | | | ||| || || || | || || | |||
Sbjct 594966 GCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGATACAGCTCCATGGCATCAATGTCA 595025
Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTA 9176
||||| || ||||| ||||| ||||| || |||||||| ||||
Sbjct 595026 CCATAAAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCCTA 595068
Score = 111 bits (122), Expect = 2e-19
Identities = 124/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 10115 GTTCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGT 10174
|||| |||||||||||| |||| |||| | || ||||| ||||||||| ||| ||
Sbjct 596927 GTTCTGTCTTACCCCATGACCCAGTCCTTTGGTAAAAGCTGGTCCTCGCTTATGATCTGT 596986
Query 10175 CCTAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTG 10234
| | |||||||| || || || || || | || || || ||||||| || ||||||||
Sbjct 596987 CTTGAAAAATTGATGGGTGAAATGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTG 597046
Query 10235 GGGATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATC 10280
|||||| |||||||| | || | | | || ||| |||||||||
Sbjct 597047 GGGATCAGGGATAAACTTTCTTCTTAGGAGAAATTTTTCCACAATC 597092
Score = 104 bits (114), Expect = 3e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | | ||| |||||||| || || || || ||| ||| |||
Sbjct 597516 TCACCTTTCACACCCATGGCAGTTGGGCAGTCGTCAGCCACAGGGGGAAGAACTCTGGTA 597575
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| ||||| ||||| ||||||||||| ||||||||||| | | || ||
Sbjct 597576 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTATAAGTT 597635
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| || |||||||||| || || ||||||
Sbjct 597636 GGTGGGCTGTCAATCAGATCTGATCTGGCT 597665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723705473966000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |