Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1424 136 9e-27 seq2363 129 1e-24 seq2080 111 4e-19 seq1767 107 5e-18 seq171 107 5e-18 seq2069 95.1 3e-14 seq1689 91.5 3e-13 >seq1424 Length=2309046 Score = 136 bits (150), Expect = 9e-27 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || || ||||||||||| || | |||||| |||| | ||| | ||||| Sbjct 23454 CAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 23513 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||||||| ||| || ||||| || Sbjct 23514 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATC 23573 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| |||||| | | ||| || |||| ||||| || Sbjct 23574 CTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGT 23633 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || ||||| || ||||| |||||| Sbjct 23634 CTTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 23669 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || || |||||||| || || | ||||||||||| | ||| | ||||| Sbjct 22998 CAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 23057 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||| || || || |||||||| | ||||||||| ||| ||| ||||| || Sbjct 23058 CTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATACCTTCCTTATC 23117 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | | ||| || |||| ||||| || Sbjct 23118 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTGATGGT 23177 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 23178 CTTGCCGGTCAGGGTCTTCACGAAGATCTG 23207 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || || ||||||||||| || | |||||| |||| | ||| | ||||| Sbjct 23226 CAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 23285 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||| || || || |||||||| | ||||||||| || || ||||| || Sbjct 23286 CTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTATC 23345 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| ||| || || || | ||||| || Sbjct 23346 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGGGTGATGGT 23405 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 23406 CTTGCCGGTCAGGGTCTTCACGAAGATCTG 23435 >seq2363 Length=646923 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||| | || || | || ||| Sbjct 186654 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 186595 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 186594 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 186535 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 186534 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 186475 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 186474 TTACCGGTCAGGGTCTTCACGAAGATCTG 186446 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||| | || || | || ||| Sbjct 187101 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 187042 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 187041 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 186982 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 186981 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 186922 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 186921 TTACCGGTCAGGGTCTTCACGAAGATCTG 186893 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||| | || || | || ||| Sbjct 187890 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 187831 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || ||||| || Sbjct 187830 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 187771 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 187770 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 187711 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 187710 TTACCGGTCAGGGTCTTCACGAAGATCTG 187682 Score = 127 bits (140), Expect = 5e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||| | || || | || || Sbjct 186882 CAGGACCAGGTGCAGGGT-GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 186824 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||||||||| ||||| || | ||||||||| || || || || || Sbjct 186823 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 186764 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 186763 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 186704 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || || || ||||| || || || Sbjct 186703 CTTACCGGTCAGGGTCTTCACGAAGATCTG 186674 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||| | || || | || ||| Sbjct 186426 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 186367 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 186366 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 186307 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 186306 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 186247 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | ||| || || ||||| || || || Sbjct 186246 TTCCGCGTCAGGGTCTTCACGAAGATCTG 186218 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||| | || || | || ||| Sbjct 187662 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 187603 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| | | ||||||||| || || || || ||| Sbjct 187602 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 187543 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 187542 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 187483 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 187482 TTACCGGTCAGGGTCTTCACGAAGATCTG 187454 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || |||||||| |||| ||||||||| | || || | || ||||||||||| Sbjct 187321 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTG 187262 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||||||| ||||| || | ||||||||| || || || || ||||| ||||| Sbjct 187261 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 187202 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| |||| |||||| | | || || |||| ||||| |||||||| || Sbjct 187201 GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGT 187142 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || Sbjct 187141 CAGGGTCTTCACGAAGATCTG 187121 >seq2080 Length=3818131 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || ||||| ||||||||||| | || |||||||| | ||| Sbjct 1111792 GAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTCGTAGTCAGATAGAGTAT 1111733 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || | ||||| || ||| |||||||| Sbjct 1111732 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTT 1111673 Query 199530 CTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 1111672 CTTTATCCTGGATCTT 1111657 >seq1767 Length=1785757 Score = 107 bits (118), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || ||||| ||||||||||| | ||||||||||| ||| || | Sbjct 523797 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACA 523856 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| || || | || ||||| || | |||| || ||| ||||||||| Sbjct 523857 TCCATCTTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTC 523916 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| ||| || ||| | || | | | ||| || || | || Sbjct 523917 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGT 523976 Query 199591 GATCGTCTTACCCG-TGAGAGTTTTCACAAAAAT 199623 || ||||| || | | || |||||||| ||||| Sbjct 523977 GAAGGTCTTCCCTGTTAAGGGTTTTCACGAAAAT 524010 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 200931 AAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 200990 || ||| ||||| || | || || |||||||||||| | || ||| | || |||||| | Sbjct 523893 AAGACTGATCTTTGCTGACAAACAATTGGAAGATGGATGTACCTTGTCTGACTACAACAT 523834 Query 200991 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 201027 || || |||||||||||||| ||||| ||||||||| Sbjct 523833 TCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTT 523797 >seq171 Length=354554 Score = 107 bits (118), Expect = 5e-18 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| |||| || || || ||||||||||| | ||||||||||| ||| Sbjct 311013 CGAAGTCTCAACGCAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCAG----AGTA 310958 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || ||| | || | ||||| || ||| |||| || Sbjct 310957 CATCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTTCT 310898 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGA-CGGTGTCTGTTGTTTCTACATCCAA 199587 || | |||||| || ||| || ||| | || | |||| ||| || || | Sbjct 310897 TCCTTATTCTGAATTTTGGCCTTTACATTTTCTATCGTTATCTGAGTGTTCAACCTCGAG 310838 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||| | |||||||| | ||||| || Sbjct 310837 AGTGATGGTCTTCCCCATAAGAGTTTTTATGAAAATCTG 310799 >seq2069 Length=3899032 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| | ||||| ||||| |||| | ||||| ||| |||||| Sbjct 1248449 CGAAGTCTCAACACAAGA-GAAGAGTAGACTCTTTTTTAA---TGTAGCCAGACAAAGTA 1248504 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||| ||||| ||||| ||| | || | ||||| || ||| ||||||| Sbjct 1248505 TGTCCATCTTCCAGTTGCTTGCCGGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCT 1248564 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||| ||||| ||| || | | ||||| | |||||| || | Sbjct 1248565 TCCTTACCCTAGATCTTGGCCTTTACATTTGCTTTTGTGTCCAAAGGTTCTACCTCAAGA 1248624 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 | ||| ||||| ||| | | |||||||||||||| Sbjct 1248625 GCGATGGTCTTCCCCATATGGGTTTTCACAAAAAT 1248659 >seq1689 Length=2064527 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| || || || ||||| ||||||||||| | | |||| |||| ||| || Sbjct 174753 AAGTCTCAACACGAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGGTATG 174812 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || || ||||| || | ||||| | ||| ||||||||| Sbjct 174813 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTCCTTC 174872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178883988716830