Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1841 89.7 6e-13 seq654 82.4 9e-11 >seq1841 Length=1603521 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 112294 AGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGA 112353 ||||||| |||||||| ||||| ||||| ||||| |||||||| ||||||| | |||| Sbjct 624289 AGTCTCAGACCGAGACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAATCGGAAGA 624230 Query 112354 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT 112413 | || || | || |||| ||||| | |||||| ||||||||||| | || | Sbjct 624229 GCAACCAGCAAAACCTGGGAACAATCAAATGCAGCAACCTGTGTACAGAAATAGTAGAGT 624170 Query 112414 TTACAGACAAAGATGAG 112430 ||| |||||||||| Sbjct 624169 ATACCAGCAAAGATGAG 624153 >seq654 Length=93227 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 102546 AATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAG 102605 ||||||||||||||||||||||||||| || || ||||| || |||||||| || ||| Sbjct 55358 AATCCATTTGACTTCATGGAGAACATTTCACTGGAAGGGAAAACTAACTTCTTTGAGAAG 55417 Query 102606 AGGGTTGGGGACTATGGCAAGATGG 102630 || || || || ||| ||||||| Sbjct 55418 AGAGTGGGCGAGTATCAGAAGATGG 55442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620723079392800