Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq654 123 3e-23
seq1841 116 4e-21
seq1669 116 4e-21
>seq654
Length=93227
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | |||||||||||||||| ||| |
Sbjct 54046 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCT 53987
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| |||||||
Sbjct 53986 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAAG 53927
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 53926 CGACAACACGTTCTCC 53911
Score = 96.9 bits (106), Expect = 4e-15
Identities = 110/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || || ||||||| | ||| ||||||||| || || | ||| ||||||||
Sbjct 55495 TTAGAAGTCGGCATCCAAGGTAAACGAATTCTCTG--TTGGACCTGACATCACTCCCATC 55438
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|| ||||| ||| | ||||| || |||||||| |||||||| || || | ||| ||
Sbjct 55437 TTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCTTCCAGTGAAATGTTC 55378
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
||||| || ||||||||||||| |||
Sbjct 55377 TCCATGAAGTCAAATGGATTTTCTAC 55352
>seq1841
Length=1603521
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || || || ||||||||||| || ||
Sbjct 610006 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 610065
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||||| ||| ||||||||||| || |||||||| | |||| | ||| |||
Sbjct 610066 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 610125
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 610126 TTTCTTATACCATA 610139
Score = 89.7 bits (98), Expect = 6e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || |
Sbjct 607769 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 607828
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || |||||||| ||| ||||||| | | ||
Sbjct 607829 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAACTGCCATCTTGAGAACGGTTT 607888
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || ||||| || || ||||||| ||| || | ||| || ||
Sbjct 607889 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 607937
>seq1669
Length=5184857
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| |||
Sbjct 4063058 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 4062999
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
||||||||||||| |||||| ||||| || ||||| || ||||| || || ||||| ||
Sbjct 4062998 AACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 4062939
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 4062938 ACCACCCTTTCCCC 4062925
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| || ||||| ||||| || ||| ||||
Sbjct 4069507 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTCTTTCCTTCTAAAGAAATATTTTCC 4069448
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 4069447 ATAAAATCAAAGGGATTTT 4069429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562091304363600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |