Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1989 127 2e-24 seq2095 104 2e-17 >seq1989 Length=1255173 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| || || Sbjct 654421 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCA 654362 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || ||||| || | ||||||||||| ||||| || || ||||| || | ||| || Sbjct 654361 AGGCCCATATCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACATAG 654302 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| || | || ||||||||||| || |||||||| Sbjct 654301 AACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAG 654264 >seq2095 Length=1036233 Score = 104 bits (114), Expect = 2e-17 Identities = 386/599 (64%), Gaps = 36/599 (6%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| | ||||| ||||| || || ||| || | ||| || ||| | | || || Sbjct 1015216 AGCTGCATTTTCAGTGGTTCAGTGTCATTCAGATAAATGTGCGCATCTTCTAAAGTATGT 1015275 Query 29851 ACAAACTCTCCCGGT-TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 ||||| || || ||| |||| ||| ||| | |||||||| | ||| || || || Sbjct 1015276 ACAAAGTCATTTGGCGTCTGGCCCA-TGATGTGTGTGATCATGTA-GAGAGCAGGGAATA 1015333 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 |||||||||||| ||||| |||| || |||| || | | |||||||| || Sbjct 1015334 GCTGGCGATGTTGAAGGGCCCCCCCAGGCCCAGATCTGCTGGCCTCTGGTT-------CA 1015386 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || | || ||||| || | ||| |||||| || | || || | Sbjct 1015387 CG------------------CCTAGAACTGGCAAAGGGTATGGCACCGAAGTAGGGC--T 1015426 Query 30030 GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 ||| ||| ||||| || ||||| |||| || |||||| | |||| || ||||| Sbjct 1015427 GAGAA--AAGATCTTTCGGTTTCCAAGCGCTCAGGATGATTCTTTTGTCATCACGGTTGG 1015484 Query 30089 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30148 | || | ||| | | ||| |||| || || || || || || || || Sbjct 1015485 TTTCGAACATGTCAATCACCTTTGGCAG-TGGTCTACTCCTTGACCTGAATAACCTTAAT 1015543 Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 ||| || |||| ||||| || |||||||||||| | || || || || || | || Sbjct 1015544 CCATATCTTTGTATTCTGCCCCAAAATGCCTCCACCGAAAGCCATAAACTAAGCCTAAGT 1015603 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || |||| ||| ||| | |||||| |||||| ||| | ||||| | Sbjct 1015604 CCCCTTCTTTTCTGCAGGAGAATTCTAGGCTGTCCAGAAAGTCATAGGACTCATTGGCAT 1015663 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAAC 30327 |||||| | || | || || || ||||| | |||||| | ||||| || ||| Sbjct 1015664 CCCAGAATCTCACTTCTTTGGATGACAGTTCTTTAGCATTTGTGTATCCCTC-GATAAAC 1015722 Query 30328 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 ||||| | |||||||| || ||||||| || || | || || || || || ||||| Sbjct 1015723 CACAGTAACTCCTCCAAAACACCCTTCCAGAATACACGTTTAGTTGTCAGCAGAGGAAA 1015781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408605199732770