Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1943 170 4e-37 seq186 122 2e-22 seq1891 84.2 4e-11 >seq1943 Length=1354173 Score = 170 bits (188), Expect = 4e-37 Identities = 186/245 (76%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 201883 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 201824 Query 241445 TCCCGCAGAACGGAC--GCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 ||||| || | ||| || || | || || |||||||| || | |||||| ||||| Sbjct 201823 TCCCGGAGGA--GACCAGCAGTGCTCGAGAGCCCTGCGTTCTCTGCCTTGAGTGTCTTCA 201766 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 201765 CCTTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCGGCCA 201706 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 || ||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| | Sbjct 201705 GCCGATTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 201646 Query 241623 GAGAC 241627 | ||| Sbjct 201645 GGGAC 201641 >seq186 Length=345539 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| || ||||| || |||||||| || ||||| | | || || | ||| Sbjct 12601 AGGACCTTTTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTTGCTGTGGACGCCAG- 12543 Query 241475 CCTGCGTTGTCAGACTTG--AGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | ||| ||| ||||||||||||||| || |||| |||||| |||| Sbjct 12542 -CTCCGTGTTCTGGCTTTTAAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCA 12484 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | ||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||| Sbjct 12483 GCTTGCGTTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCT 12424 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || || || ||||||||||| || ||| Sbjct 12423 TGATACGCTCTTGTGTGTCCATGTCGATGGGCGAC 12389 >seq1891 Length=4301925 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| |||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 2582091 TTCACTTTTTCCTCCAGCCTGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2582150 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || || ||| |||||||||| Sbjct 2582151 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCTTGGGACTCCATGTCG 2582210 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 2582211 ATAGGGGAC 2582219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503806041600