Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17]
2,490 sequences; 1,910,250,568 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1943 170 4e-37
seq186 122 2e-22
seq1891 84.2 4e-11
>seq1943
Length=1354173
Score = 170 bits (188), Expect = 4e-37
Identities = 186/245 (76%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 201883 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 201824
Query 241445 TCCCGCAGAACGGAC--GCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502
||||| || | ||| || || | || || |||||||| || | |||||| |||||
Sbjct 201823 TCCCGGAGGA--GACCAGCAGTGCTCGAGAGCCCTGCGTTCTCTGCCTTGAGTGTCTTCA 201766
Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562
| || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 201765 CCTTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCGGCCA 201706
Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622
|| ||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| |
Sbjct 201705 GCCGATTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGG 201646
Query 241623 GAGAC 241627
| |||
Sbjct 201645 GGGAC 201641
>seq186
Length=345539
Score = 122 bits (134), Expect = 2e-22
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| || ||||| || |||||||| || ||||| | | || || | |||
Sbjct 12601 AGGACCTTTTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTTGCTGTGGACGCCAG- 12543
Query 241475 CCTGCGTTGTCAGACTTG--AGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532
|| ||| || | ||| ||| ||||||||||||||| || |||| |||||| ||||
Sbjct 12542 -CTCCGTGTTCTGGCTTTTAAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCA 12484
Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592
| ||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||
Sbjct 12483 GCTTGCGTTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCT 12424
Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
|||| || || || ||||||||||| || |||
Sbjct 12423 TGATACGCTCTTGTGTGTCCATGTCGATGGGCGAC 12389
>seq1891
Length=4301925
Score = 84.2 bits (92), Expect = 4e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| |||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 2582091 TTCACTTTTTCCTCCAGCCTGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2582150
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || || ||| ||||||||||
Sbjct 2582151 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCTTGGGACTCCATGTCG 2582210
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 2582211 ATAGGGGAC 2582219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931503806041600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |