Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2123 161 6e-34 seq2429 120 2e-21 seq1269 114 8e-20 seq91 107 1e-17 seq558 93.3 3e-13 seq1424 91.5 1e-12 seq2080 87.8 1e-11 >seq2123 Length=1033990 Score = 161 bits (178), Expect = 6e-34 Identities = 370/552 (67%), Gaps = 4/552 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| || ||||| || || | || || || ||| ||||| | || | || ||| Sbjct 481516 GAATGGCCATTGGCATCGACCTGGGCACCACCTACTCATGTGTGGGGGTGTTCCAGCATG 481575 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || || || || || ||||| ||||| || || | || || || || || | | Sbjct 481576 GCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCTAGCTACGTGGCCT 481635 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || ||||| | || || || ||||| || || | || | || ||||| Sbjct 481636 TCACCGATACTGAGCGGCTCATCGGGGATGCCGCCAAGAACCAGGTAGCCATGAATCCCC 481695 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || | Sbjct 481696 AGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAATGATCCTGTAGTAC 481755 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 |||| |||||| | |||||||||| | || || |||| || || || || | | | Sbjct 481756 AATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCTAAGGT-G 481814 Query 474624 AAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | | || ||| || | ||| || | || ||| |||| ||||| ||||| Sbjct 481815 CTGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAAGAAATCTCTTCTATGGTA 481874 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 || | |||||||| | || || ||| | | | | || || || || |||| || Sbjct 481875 CTAACTAAAATGAAGGAGACTGCTGAGG-CTTTTTTAGGCCACCCTGTCACCAATGCTGT 481933 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || ||||| ||||| ||||| ||||| |||||||| || || || || ||||| || Sbjct 481934 GATCACTGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGT 481993 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||||||||| ||||| ||| | ||||| |||||||| ||||| || || |||| || Sbjct 481994 GATTGCAGGTCTCAATGTGTTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCCTA 482053 Query 474862 TGGTCTTGATAA 474873 ||| | ||||| Sbjct 482054 TGGCTTAGATAA 482065 >seq2429 Length=579621 Score = 120 bits (132), Expect = 2e-21 Identities = 324/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| ||||| || | | | |||||||| || | || | ||||| ||||| Sbjct 350295 GAAGATGGAATTTTCGAAGTGAAATCTACAGCTGGGGACACCCACTTAGGTGGAGAAGAC 350236 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455 ||||| || || | || | ||| | | ||| ||| || ||| | || |||| || Sbjct 350235 TTTGACAACCGAATGGTCAACCAT--TTTATTGCAGAGTTTAAGCGCAAGCATAAGAAGG 350178 Query 475456 TGATCTTTCAACATCTGCTAAAG--CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCT 475513 ||| | | | | |||| | | |||||||| | |||||||||||||||||| Sbjct 350177 ACATCAGTGAGAA----CAAAAGGGCTGTCAGACGTCTCCGCACTGCTTGTGAACGTGCT 350122 Query 475514 AAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGA 475573 ||||| | |||||||| ||| || | | | |||| ||||||| || | ||||||| Sbjct 350121 AAGCGTACCCTTTCTTCCAGTACCCAGGCCAGTATTGAGATTGATTCGCTCTATGAAGGA 350062 Query 475574 ATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTT 475633 || || | |||| ||| || | || ||||||||| | | |||| || || Sbjct 350061 ATCGACTTCTATACCTCTATCACTCGTGCCCGATTTGAAGAATTGAATGCTGACCTTTTC 350002 Query 475634 AGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAA 475693 | || | || || || ||| ||| || | ||| | || || ||||| || || Sbjct 350001 CGTGGCACCCTGGACCCTGTAGAAAAAGCCCTTCGGGATGCGAAGCTCGACAAGTCCCAG 349942 Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 ||||||| ||||| || || || ||||| || | || || || || ||||| | Sbjct 349941 ATCCATGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCTAAGAT-TCAGAAACTTCT 349883 Query 475754 TCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 || | | || ||||| ||| | || ||| | || | || |||||||||||||| || Sbjct 349882 ACAGGACTTCTTCAATGGAAAAGAATTGAATAAGAGCATCAACCCTGATGAAGCTGTCGC 349823 Query 475813 ATATGGAGC 475821 ||||| || Sbjct 349822 TTATGGTGC 349814 Score = 102 bits (112), Expect = 5e-16 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || ||||||||||| | Sbjct 349102 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAGCTCACAGGCATACCTCCTGCTCCTCGT 349043 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct 349042 GGTGTTCCTCAGATTGAAGTCACTTTTGATATCGATGCTAATGGTATACTTAATGTCTCT 348983 Query 476171 GCTTGTGATAA-ATCTAGTAACAAGAGTAAAAATATAACTATTACAAA 476217 ||| ||||| | | | | ||||| || || || ||||| || || Sbjct 348982 GCTGTGGATAAGAGCACGGGAAAAGAG-AACAAGATTACTATCACTAA 348936 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || || ||||| ||||| ||||| || || || || ||||||| Sbjct 350601 ATGCTGTGGTCACAGTACCTGCTTATTTCAATGACTCTCAGCGGCAGGCTACCAAAGATG 350542 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| ||||| | | ||||| ||||||||||| || || || Sbjct 350541 CTGGAACTATTGCTGGTCTCAATGTACTTAGAATTATCAATGAACCAACTGCTGCTGCTA 350482 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | ||||| || Sbjct 350481 TTGCTTATGGCTTAGATAAAAA 350460 Score = 93.3 bits (102), Expect = 3e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| ||||| | ||| | || | || || Sbjct 351566 TGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCACGGAAA 351507 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| |||||||||||||| ||||| || || |||| || ||| || || ||||||| Sbjct 351506 AGTGGAAATAATTGCCAACGACCAGGGAAACCGAACTACTCCAAGTTACGTGGCTTTTAC 351447 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 ||| || || | | || || |||||||| || |||||| |||| Sbjct 351446 TGATACGGAGCGATTGATCGGTGATGCTGCAAAGAATCAAGTTGCA 351401 Score = 87.8 bits (96), Expect = 1e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 ||| || ||||||||||| |||||||| | ||||| ||||| ||||| || | | ||| Sbjct 350486 AGCAGCAGTTGGTTCATTGATAATTCTAAGTACATTGAGACCAGCAATAGTTCCAGCATC 350545 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTTT 290959 | || ||||| || || | ||||| ||||||||||| ||||| | ||||| ||| Sbjct 350546 TTTGGTAGCCTGCCGCTGAGAGTCATTGAAATAAGCAGGTACTGTGACCACAGCATTT 350603 >seq1269 Length=2386437 Score = 114 bits (126), Expect = 8e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| |||||| ||| | || ||| || Sbjct 1516260 TGCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGCATGTCTTTCAGCATGAAAA 1516201 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||||||||||||||| || | || |||| || || |||| | | ||||| Sbjct 1516200 AGTGGAAATAATTGCCAATGATCAGAGAAACTGAACCACCTCAAGTTATGGTGCCTTTAC 1516141 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || || | |||| |||||||| || |||||| ||| || | || Sbjct 1516140 TGATACCTAATGATTGATTGATGATGCTGCAAAGAATCAAGTCGCAATGAACCTCACCAA 1516081 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 | |||||||||| ||| | ||||||| | || ||||||||| | ||| ||||| Sbjct 1516080 CATGGTTTTTGATGCCAAATGCCTGATTGGACATAGATTTGATGATTCTGTTGTTCAATC 1516021 Query 474568 TGATATGCGTCATTGGCCTTTTAAGG 474593 ||||||| |||||||| || |||| Sbjct 1516020 TGATATGAAGCATTGGCCCTTCAAGG 1515995 >seq91 Length=3235863 Score = 107 bits (118), Expect = 1e-17 Identities = 195/283 (69%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 ||| |||| |||| |||||| | | || |||||| |||||| ||||| | ||| | | Sbjct 2257805 GAACTGCAGTTGGCATTGATCTCAGCACCACTTACTCTTGTGT-GCTGTCTTGCAGCAAG 2257863 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||||||||||| ||| || || || |||| || ||| || | | | Sbjct 2257864 G-AAAGTGGAAATAATTGCCAGTGATCAGGGAAACTGAACCACCCCAAGTTACTTGGCCT 2257922 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || | || || |||||||| || |||||| || | | || Sbjct 2257923 TTACTGATACCGAGCAGTTGATGGGTGATGCTGCAAAGAATCAAGTTGTAATGGACCCCA 2257982 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || | |||||||| || | ||||||| | || ||||||||| | |||| Sbjct 2257983 CCAACATGGCTTTTGATGTCCAATGCCTGATTGGGCATAGATTTGATGATGCTGTTGTCT 2258042 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGG 474606 ||||||||||| || || || ||| |||| | | || ||| Sbjct 2258043 AATCTGATATGAAACACTGACCCTTTGTGGTGGTGACTGATGG 2258085 >seq558 Length=2832783 Score = 93.3 bits (102), Expect = 3e-13 Identities = 205/304 (67%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || ||||| ||| | || ||||||||| |||| || || |||||||||||| | Sbjct 937234 ACAAAAGACAATCATCTTCTGGGAACTTTTGATCTGACTGGAATCCCTCCTGCTCCCCGT 937293 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 ||||| || || |||||||| |||||||| || |||| ||||| |||||| || || Sbjct 937294 GGAGTCCCACAGATTGAAGTCACTTTTGAGATAGATGTGAATGGCATTCTTCGAGTGACA 937353 Query 476171 GCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGTGGTAGA 476230 ||| || ||| || ||| | || || || || ||||| || ||| | | Sbjct 937354 GCTGAAGACAAAGGTACAGGCAACAAAAATAAGATCACAATTACCAATGATCAAAATCGC 937413 Query 476231 TTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGAAGCTGAT 476290 | || ||| | || || | |||||| |||| || || |||||| || | ||| Sbjct 937414 CTGACACCTGAAGAGATCGAAAGGATGGTTAATGATGCTGAAAAGTTTGCTGAGGAAGAT 937473 Query 476291 AACAAGAGAAA--AGCTGCTATTGATGCAAAGAATGAACTTGAAAATTATGTTCATAGTG 476348 || ||| || ||| || |||||| | | |||||| | |||| ||||| | || | Sbjct 937474 AAAAAGCTCAAGGAGC-GC-ATTGATACTAGAAATGAATTAGAAAGTTATGCTTATTCTC 937531 Query 476349 TAAA 476352 |||| Sbjct 937532 TAAA 937535 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936 ||||| |||| || ||| ||| || | ||| ||||||| |||||||| | ||||| Sbjct 936607 GTACTGCTTGATGTGTGTCCGCTTACACTTGGTATTGAAACTGTTGGAGGTGTCATGACC 936666 Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996 || || ||| ||| || ||| | || ||| || ||| || | ||||| || | Sbjct 936667 AAACTGATTCCCAGGAACACTGTGGTGCCCACCAAGAAGTCACAAATCTTTTCTACAGCT 936726 Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGA 476040 |||||||||||| ||||||| || ||| || | | ||||||||| Sbjct 936727 TCTGATAATCAACCAACTGTTACAATCAAAGTTTATGAAGGTGA 936770 >seq1424 Length=2309046 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || || ||||| || || ||||| || || || |||| ||||| | | Sbjct 22993 AGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGG 23052 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || || || || ||||| || || | || || ||||||||||| |||||| Sbjct 23053 CCATCCTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATACCTTCC 23112 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || || || ||||| || ||| ||||| || ||| || || ||| ||||| Sbjct 23113 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGGGTG 23172 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || ||||| ||||| || || Sbjct 23173 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTG 23207 >seq2080 Length=3818131 Score = 87.8 bits (96), Expect = 1e-11 Identities = 100/128 (78%), Gaps = 6/128 (5%) Strand=Plus/Minus Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT-ATCT 480620 ||||||||||| || ||| |||| ||| | || |||| |||||| ||| |||| Sbjct 1111781 ACAAGATGAAGAGTGGACTC-CTTTTGAATG-TCGTAGTCAGATAGAGTA-TGTCCATCT 1111725 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || |||||||| |||||||| || || | ||| |||||||||||||||||||| || || Sbjct 1111724 TCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCC 1111665 Query 480681 TGAATCTT 480688 || ||||| Sbjct 1111664 TGGATCTT 1111657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268072391818520