Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1837 324 2e-83 seq1719 159 4e-34 seq391 116 4e-21 seq2268 87.8 2e-12 >seq1837 Length=1607474 Score = 324 bits (358), Expect = 2e-83 Identities = 672/993 (68%), Gaps = 17/993 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| || || || |||| |||||||| ||| || | ||| | |||| ||| || ||| Sbjct 104348 TGTCTCAAGTGCTCATCCAAACATTGGATGGCAAAGAGGTCGATGTCTGTGTCAAACTTA 104289 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || || || ||||||| || ||| || | || || || Sbjct 104288 TTGGCAAATAAGTGGTGC---TTGTGCAGTATCCAGTTCAAGTCACCTGCTCCAAAAACA 104232 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||||| |||| || || || ||||| || ||||| | || || || | || || Sbjct 104231 CACACGGAGCGTACATGGACACCATTGCAGGGTGGGTAGGGGGCGCCCTTGGAAACATCG 104172 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| |||||||| || || || |||||||||| |||| || Sbjct 104171 CCTTCAAAGTACTGCCACTTGACAAACCTAGCGATTGCAAGCATGTCGGACATGTCATAC 104112 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || || | | ||| | | || || || | || || | ||| | |||||||| || Sbjct 104111 TTATAGTTTAAGGGCAGTGAGCCTGGGACTTCAGGGATCCTCTGAATAGTGGCCCAGAGA 104052 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || || |||||||||||||| || | ||| ||||| |||| | |||| || || Sbjct 104051 TACTCATCTGGGCTGTACGTGTCTTTTGCCCACTCCATAAACTTTTGGATT---CTTTCA 103995 Query 160407 CGC---AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || |||| || || || | || || || || || ||||| || || Sbjct 103994 TTCTCTAGTACGTACTCCACATAATTCCTACTGACCACGAAATAGGCACTGCCTGAAAAC 103935 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | ||| | | ||| || ||| ||| ||| || ||||| | || | ||| || Sbjct 103934 AGAGGTGTTTCAAGAGGAGG-GTGCATTTTGTCAGTCCCTGTGTTTGTCAGCTTTCCATT 103876 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 || | | | |||| |||||||| | || || | | |||||| || || || Sbjct 103875 AACAACTGTATAATGCTTTTTCCACCTTTCTATTTTATTGGATGGCATTTTCTCAGTTTC 103816 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 ||| |||| | || | || || || | | |||| || || ||||| || || | Sbjct 103815 TAGGTTGTTTTCTCCCATTAATGACTTGAGTTTCCTGACAATTTCCAGGTTGGTTTTAAT 103756 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 ||||| || |||| || | ||||||| ||||||||| || || |||| || || Sbjct 103755 AGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTCTGTAGAG 103696 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 |||| ||| || || | || ||||| || || ||||| || || ||||| || |||| Sbjct 103695 GTCCTGCATACAGTTGAGGTCGGCCTGGACCCGACTCCATGATGCATACACCACACTCTC 103636 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAG 160819 || | ||||||||||||||| |||| |||||| || | || || |||| | |||| Sbjct 103635 CAGCTGACTGGCCACAAAGACATTATTGAAACAGGATGCAATGCCAATCACCGCAGCCAA 103576 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 |||| | ||| || | ||| |||||| || | |||||| | ||||||||| || Sbjct 103575 AAAGGA-ATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 103519 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||||||||| || | ||| || | ||| || || || ||||| | ||| || || || || Sbjct 103518 GATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATGGAATATGC 103459 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||| |||||||| | ||| || ||| |||| | | ||||| ||| | ||||| Sbjct 103458 TATTGGAAACTCTGCCTCTTCCTTACTAAGGGGTTCTACAATATACTTGCGCCTTTTGAT 103399 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || |||||| |||||||| ||||| Sbjct 103398 GAAAGAAGTACAATCATTAGTCATGTTTATATA 103366 >seq1719 Length=1953405 Score = 159 bits (176), Expect = 4e-34 Identities = 216/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 168169 TTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCT 168228 |||| || || || || || || || || |||||||||||| || | || || || || | Sbjct 1467536 TTCCTGAGATTTTCCCAGAACCAAAAGTATTGAAGAGGCACTTGTAACACCCCTCATCAT 1467595 Query 168229 CCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCA 168288 ||| || |||||||| || || | |||||| | |||| |||| || || ||||| | Sbjct 1467596 CCAACGTAGTATTCCAGAAGGTAATGGTTGAGCTCTGGAGTCCCAGCTCAGTGATGTTTA 1467655 Query 168289 CACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGT 168348 ||| ||||| | || || || ||||| || ||||||| ||||||||| ||||||| Sbjct 1467656 TCTTATCCTTATAGGCAGTCTGGACCACAACTCCATGGTTCTTGCTGAAGGTAGCCATGT 1467715 Query 168349 TCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCT 168408 | || ||||| || || || |||||||| || || |||| ||| || | || | Sbjct 1467716 TTTCTGGGCTTACAGCTTTGATTTTCTGCCATGTCACAATCAAAACTTCATGGGAAGTTT 1467775 Query 168409 GCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGA 168468 ||| || |||| | ||||| || ||||||||||| |||| |||||| | || || | Sbjct 1467776 CCAGAGAGCATCGTAAGGAAGCAGGTGTGTTCAGCAGCTCTCTTTCATCTCGGGTCACCA 1467835 Query 168469 C 168469 | Sbjct 1467836 C 1467836 >seq391 Length=2997115 Score = 116 bits (128), Expect = 4e-21 Identities = 349/532 (66%), Gaps = 22/532 (4%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| ||||||| | || | Sbjct 521449 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATAAATGAATCTGCT 521508 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| ||| || || || | ||| || ||||| | | || Sbjct 521509 GGAATATAATTTTCATAGTTTTCTCTAGATGGCCCCAGAACAATAGGTACAGAGCCAGCC 521568 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| ||||||||||| || | Sbjct 521569 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCGAAGGAA 521628 Query 176412 AAATAGAACTTACATGAGCCTAACAATGGT----ATTAGGTCCGGAT--TGGAGATGTGG 176465 | |||||| || || | || ||||| |||| | || | | || | Sbjct 521629 AGATAGAATTTGCAAG----TAGATATGGTAGGAATTAAATTTTTATCATTCACATAT-- 521682 Query 176466 TTTCCAACAGCATTGCCGTATACGTGTNNNNNNNNATATTTTTG--TAACTCCATGTAAT 176523 | ||||| || ||||| ||| || | ||| ||||| |||||| |||||| Sbjct 521683 TCTCCAAATGC-TTGCC-CATAAGTATGGATTTCAATACTTTTGCTTAACTCATTGTAAT 521740 Query 176524 ATTGCGATCTGACGTAATCTGGGTTCCAATTGCTTACTACCCAACATATGAGTTTATCCT 176583 | | ||| | | || |||||||| || ||||| ||||| || | | || || | Sbjct 521741 ACTTGACCCTGGCATGCTCAGGGTTCCAGTTACTTACAACCCAGCAAACCAACTTCTCTT 521800 Query 176584 TTTGTGGGATCCGTGATGTAGTGGTAGTATTTTTAATAA---TCAATGAACCATAAGGTA 176640 | ||| | | | | | | | |||| | | | |||| | |||||||| | Sbjct 521801 TGCTTGGCA--CTTCAAACA-CGAACGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCA 521857 Query 176641 CAGTGATATCTGAATCCTGTCTATAAGTTACTGTAATATTAAAGAGATGTTCCAAATCTA 176700 | ||||||||| || | | |||||| | || | || || ||||| || | | | Sbjct 521858 CTTGGATATCTGAGTCGCGGCGATAAGTCAGAGTCAGGTTGAACAGATGCTCAATACCAC 521917 Query 176701 TCTTTTTAGGACTGTTACTGGGGGATTCAAAATTTATCCAGATCCATTTTTG 176752 |||||| || ||| | | || ||||| ||||| ||||| |||||||| || Sbjct 521918 TCTTTTGGGGCGTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTG 521969 >seq2268 Length=6398370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/284 (67%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || |||||||| || |||||| || ||||| |||| ||| || | Sbjct 2179870 GTCAAACTTGTTGGCCAACAGATGATG---GTTCTGAAGAATCCAATGCAGGTCCCCAGC 2179926 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | |||| | || ||| | ||| |||||| | || | || || | Sbjct 2179927 CCCATAAATACAGATAGCCCGCTGGTGGATCCCGGAGCAAGGGGCATAAGGTGCCCCCAT 2179986 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || ||||| | | || |||||| || | |||||| || || |||||| || Sbjct 2179987 GCTGACATCTCCTTCATGGCCCTCCCACTTGACCAGCCTGGCAATGGCAGCCATGTCTGA 2180046 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | || |||||| ||||| | || || | | ||| |||||| ||||| Sbjct 2180047 GAAGTGATATTTGGGGTGGTAAGGAACAGAGCCAGGCATCCAGGGTGCACGCTGAAGGGT 2180106 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATT 160380 |||||| |||||||| |||||||| || ||||| || | ||||| Sbjct 2180107 GGCCCAAAGGTGTTCATCGGGGCTATAAGTGTCTTTTGCCCATT 2180150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577201234052400