Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1767 98.7 2e-15 seq2363 91.5 3e-13 seq1424 91.5 3e-13 >seq1767 Length=1785757 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 523807 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACATCCATCTTCC 523866 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 |||||||| | ||||| || | ||| | ||||||||||| |||||||| ||||| || Sbjct 523867 AATTGTTTGTCAGCAAAGATCAGTCTTCGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 523926 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||| | || | ||||| || ||||| | || || Sbjct 523927 ATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGTGAAGGTCTTC 523986 Query 193332 CCTGTT-AGCGTTTTTACAAATAT 193354 |||||| || ||||| || || || Sbjct 523987 CCTGTTAAGGGTTTTCACGAAAAT 524010 >seq2363 Length=646923 Score = 91.5 bits (100), Expect = 3e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193121 AGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAAT 193180 || || ||| | ||| |||||||| ||||| ||||| |||| || | ||| || || Sbjct 187918 AGGAACTTAGACACCTCCTCTCAAGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGAT 187859 Query 193181 ATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTG 193240 || |||||||| | || | || || | || ||||||||||| || | ||||| Sbjct 187858 GTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTG 187799 Query 193241 TTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATC 193300 || ||||| || || ||||| || ||||| || |||| || | || || || || Sbjct 187798 CTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 187739 Query 193301 GGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | | ||| || || || || || || ||||| || || || || || || || ||||| Sbjct 187738 GCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 187679 >seq1424 Length=2309046 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||||||||| || | ||| || ||| || || || Sbjct 23437 ATACCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGAATGTTGTAATCA 23496 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || ||| Sbjct 23497 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGA 23556 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||| |||| ||| || || || | || Sbjct 23557 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGTTCC 23616 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || || || || || || || || ||||||||||| Sbjct 23617 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 23669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899626398256800