Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rousettus_20aegyptiacus_20[refseq_20GCF_5F001466805.2_202016-03-17] 2,490 sequences; 1,910,250,568 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1767 104 4e-17 seq1689 86.0 1e-11 >seq1767 Length=1785757 Score = 104 bits (114), Expect = 4e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||| || || | ||| | ||||| ||| || ||| || Sbjct 523779 TTTCTTAGCACCACCATAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 523838 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || || | | | | || ||||||||||| ||||||| || | ||| | || Sbjct 523839 GTAGTCAGACAAGGTACATCCATCTTCCAATTGTTTGTCAGCAAAGATCAGTCTTCGCTG 523898 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||| | || Sbjct 523899 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGA 523958 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATGAATATCTGCA 172068 | ||| || || ||||| | ||| || || ||||| ||||| | ||| |||| || Sbjct 523959 GGGTTCAACCTCAAGAGTGAAGGTCTTCCCTGTTAAGGGTTTTCACGAAAATCTCCA 524015 >seq1689 Length=2064527 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 171838 TAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAAT 171897 ||| | |||| | ||||| || || | ||| | ||| | ||| || ||| | |||| Sbjct 174740 TAACATCACCACAAAGTCTCAACACGAGATGAAGAGTGGACTCCTTTTGAATGCTGTAAT 174799 Query 171898 CTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAG 171957 | || || | || | || |||| ||| || |||||||| || | ||| || || | || Sbjct 174800 CAGACAAGGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAG 174859 Query 171958 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATT 172017 | || |||||||| |||| || || || |||| || ||| ||||| | | || Sbjct 174860 GAGGAATTCCTTCCTTATTCTGGATCTTGGCCTTTATATCTCCTATTGTATCCAAGGCTT 174919 Query 172018 CTACTTCTAGAGTAATGGTTTTACC-AGTTAATGTTTTAATGAATATCTGCATTTTA 172073 | || || ||||||||||| || || || | ||||| | ||| |||||| | ||| Sbjct 174920 CAACCTCGAGAGTAATGGTCTTCCCTTGTAAGGGTTTTCAAGAAAATCTGCGTCTTA 174976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905107827642000